Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05820 ATGAAATTGAGTTGCAATGGATGCCGCGTACTTCGAAGAGGATGCAATGATGACTGCATCATCAAACCTTGCCTTGAGTGGATCAATTCCCCTGAAGCCCAAGGCAATGCCACCCTCTTCCTTGCCAAGTTCTATGGTCGAATTGGCTTGCTCAACCTCCTTACTAACGCTACCAATCAAAATGCTCAAGATGTGTTCAAGTCATTGTTGTACGAGGCTGCGGGTAGATTGGTGAATCCCACACATGGGGCACTAGGCTTACTTTGGACAGGACAATGGAGCCGATGTGAAGCTGCAGTTCAAGCCGTGCTGACCGGATCAAATATTAATGATGTTTCATTTGTTGATGTGCAGACATCATCAGGCACACTTATTGCTGAAAATCCTGTTCTTCCAACAACCTCTGATATACGCCATGTGGCAAGAGGTACCAATGTGGACATCAAAGAGAAAACTCAATTCAAGAGAGCTGGATCAACTTTCAAGCCTAAGCCGCGAGTTGGTTTGGCCGACAAGACTACACTTTTGAAATCAATTCTGGACAATGGCAACACGAAAACTGTTGAGGCTTCATCAATGATTGATAAAGAGCTGAATGGAGCTGCTGAAACTCAAGTGGACTTGGAACTCACTCTTGGCTTCAATTGTCAATCAAACAAGGGCAAAAAAATCATATGA 678 0.444 MKLSCNGCRVLRRGCNDDCIIKPCLEWINSPEAQGNATLFLAKFYGRIGLLNLLTNATNQNAQDVFKSLLYEAAGRLVNPTHGALGLLWTGQWSRCEAAVQAVLTGSNINDVSFVDVQTSSGTLIAENPVLPTTSDIRHVARGTNVDIKEKTQFKRAGSTFKPKPRVGLADKTTLLKSILDNGNTKTVEASSMIDKELNGAAETQVDLELTLGFNCQSNKGKKII 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05820 225 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre2g05820 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 211 - -
Trre2g05820 225 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05820 Trre-Chr2 63875476 63876601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05820 1 145 AS2 family AT3G02550 50.345 1.59e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre2g05820 LOB 5.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05820 - - mtr:25485496 320.087