Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05815 ATGTGTGTAGTGATGGGGAAAGGAAGGAGACAAGATGGAAATCCATTAGACCTTAACAATCTGCCTGATGACAACAACTCAAGTAGAGATCATCATGCTAAACAACTTCTTCCTAACACCACCTCCTTATTACAACCTGTTACAGGTTATAAGGAAAAGGAAGGCGGCGAAGATGATGATGATGATGATGATAGAAAAGATGGGAAGGTGTATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAAAGAAACAGAGAAATTGAACAATGCTCGTCAGCTGCTCTTACTTAATGATCATAATCTTGTTGCTCAAGCTGCTCTTCACCTAGGATGTTATCCACCAATAGCAACAGCAGCAGGGTATAATCCAGCAGGTAACATAGGAGATTATCATCATCACCCAACAATGCCTCTAAGATTCCCAACATCCTTCTCTGCACCATCTGGTTCATCATCCTCAATCCACGTACCACCACCACCACAACAACAACAATATATATATGCTTCTTCACCTTCAAGGCCCACCATGTCTTACCCTACACATTTGATTCCTCAGCATCATCAAATAAATGATTACCACCGTATGACTCATCATGTTATTAGTAACAACAACAGCCACCACAACATGAACTATGTTGCTGCAGGTGCAAGTGGCGGTGAGTCAAGTTACACGTGCATAGGTGCACCAGTTGGACAAGGTTTTCCAGATAATCCTTCAACGATCAATCGGTTTCAAGAGTGA 786 0.4262 MCVVMGKGRRQDGNPLDLNNLPDDNNSSRDHHAKQLLPNTTSLLQPVTGYKEKEGGEDDDDDDDRKDGKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLLNDHNLVAQAALHLGCYPPIATAAGYNPAGNIGDYHHHPTMPLRFPTSFSAPSGSSSSIHVPPPPQQQQYIYASSPSRPTMSYPTHLIPQHHQINDYHRMTHHVISNNNSHHNMNYVAAGASGGESSYTCIGAPVGQGFPDNPSTINRFQE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05815 261 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Trre2g05815 261 Gene3D Classic Zinc Finger 61 123 - -
Trre2g05815 261 PANTHER ZINC FINGER PROTEIN JAGGED 33 246 IPR045320 GO:0003700
Trre2g05815 261 FunFam Zinc finger protein STAMENLESS 1 51 119 - -
Trre2g05815 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Trre2g05815 261 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Trre2g05815 261 MobiDBLite consensus disorder prediction 1 41 - -
Trre2g05815 261 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05815 Trre-Chr2 63791081 63793636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05815 9 248 C2H2 Transcription Factor Family AT1G13400 37.603 3.71e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05815 - - tpra:123900543 374.015