Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05814 ATGTGTGTAGTGATGGGGAAAGGAAGGAGACAAGATGGAAATCCATTAGACCTTAACAATCTGCCTGATGACAACAACTCAAGTAGAGATCATCATGCTAAACAACTTCTTCCTAACACCACCTCCTTATTACAACCTGGTTATAAGGAAAAGGAAGGCGGCGAAGATGATGATGATGATGATGATAGAAAAGATGGGAAGGTGTATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAAAGAAACAGAGAAATTGAACAATGCTCGTCAGCTGCTCTTACTTAATGATCATAATCTTGTTGCTCAAGCTGCTCTTCACCTAGGATGTTATCCACCAATAGCAACAGCAGCAGGGTATAATCCAGCAGGTAACATAGGAGATTATCATCATCACCCAACAATGCCTCTAAGATTCCCAACATCCTTCTCTGCACCATCTGGTTCATCATCCTCAATCCACGTACCACCACCACCACAACAACAACAATATATATATGCTTCTTCACCTTCAAGGCCCACCATGTCTTACCCTACACATTTGATTCCTCAGCATCATCAAATAAATGATTACCACCGTATGACTCATCATGTTATTAGTAACAACAACAGCCACCACAACATGAACTATGTTGCTGCAGGTGCAAGTGGCGGTGAGTCAAGTTACACGTGCATAGGTGCACCAGTTGGACAAGGTTTTCCAGATAATCCTTCAACGATCAATCGGTTTCAAGAGTGA 780 0.4269 MCVVMGKGRRQDGNPLDLNNLPDDNNSSRDHHAKQLLPNTTSLLQPGYKEKEGGEDDDDDDDRKDGKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLLNDHNLVAQAALHLGCYPPIATAAGYNPAGNIGDYHHHPTMPLRFPTSFSAPSGSSSSIHVPPPPQQQQYIYASSPSRPTMSYPTHLIPQHHQINDYHRMTHHVISNNNSHHNMNYVAAGASGGESSYTCIGAPVGQGFPDNPSTINRFQE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05814 259 Gene3D Classic Zinc Finger 59 121 - -
Trre2g05814 259 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Trre2g05814 259 PANTHER ZINC FINGER PROTEIN JAGGED 33 244 IPR045320 GO:0003700
Trre2g05814 259 SUPERFAMILY beta-beta-alpha zinc fingers 60 113 IPR036236 -
Trre2g05814 259 MobiDBLite consensus disorder prediction 32 46 - -
Trre2g05814 259 MobiDBLite consensus disorder prediction 1 62 - -
Trre2g05814 259 FunFam Zinc finger protein STAMENLESS 1 49 117 - -
Trre2g05814 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05814 Trre-Chr2 63791081 63793636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05814 9 246 C2H2 Transcription Factor Family AT1G13400 39.583 2.84e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05814 - - tpra:123900543 369.392