Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05813 ATGAAATGGAATAATCCATTTGTGCCGGATGCATATGGAAAAACATTTGCAAAGAGGGGTGTTTATCTCATATCATTTTTATTTTTTCACTTCTTTCTGTCTCTCTCTGTCGGTACCATCATCATGAGACCACAAGGAAATCCATTAGATCTTAACAATTTGCCTGATGATTACTCTAGAGATCATGGTAAACAAGTTCTTGAAGACACTGATCCACCCGCAGGTTGCATCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGAAGAGTGTGGGAAGGTGTGTGAATGTAGATTTTGTTCCCTTAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTTAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATAACCAGCTTGCACCACAACCACCTCCCTCTCACCTTGTAGGATGTTGTCCACCACCACCAATAGCATCAGCAGGCTACATTCAAGCAAATAACATGGGAGATCCAACAATGCCTTTAAGATTCCCAAGATATTTCTCAGGCTCATCTTCCTCAACTCATATTCCTCCTCCACCACCGCCGCCACCACAACCAACTCAACCATATCTCTACACTTCACCTTCGCGACCGGTGTCTTTCCCTACACATATAATTCCTCAGCATCCGATGAACGAATACCATGTCGGTCACGTGATGAGTAGCAACCACCACCAGCAATATGGAGGACTCCAACACATGAACTATGTTGGTGGAGCTGGTGGTGGTGAGTCAAATTACACGTGCATAGGTGCACCGGTTGGACAAGGTTTTGTTCCGGGAAGTGGTGGCGCCGAGAAAGGTCAAAATCATCATCATCAACAACATCAGGATCAAGATGGAACTTTGAATTGGGGAAGGAGTACCTACTCAGGAACACAGCATCGTTTGGATACTCATAATAATTCATCGATCAATCGGTTTCAAGATGGCTTCTAA 987 0.4488 MKWNNPFVPDAYGKTFAKRGVYLISFLFFHFFLSLSVGTIIMRPQGNPLDLNNLPDDYSRDHGKQVLEDTDPPAGCIRKKKNGGKDGKEECGKVCECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNQLAPQPPPSHLVGCCPPPPIASAGYIQANNMGDPTMPLRFPRYFSGSSSSTHIPPPPPPPPQPTQPYLYTSPSRPVSFPTHIIPQHPMNEYHVGHVMSSNHHQQYGGLQHMNYVGGAGGGESNYTCIGAPVGQGFVPGSGGAEKGQNHHHQQHQDQDGTLNWGRSTYSGTQHRLDTHNNSSINRFQDGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05813 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Trre2g05813 328 MobiDBLite consensus disorder prediction 295 328 - -
Trre2g05813 328 MobiDBLite consensus disorder prediction 176 207 - -
Trre2g05813 328 ProSitePatterns Zinc finger C2H2 type domain signature. 95 117 IPR013087 -
Trre2g05813 328 MobiDBLite consensus disorder prediction 190 207 - -
Trre2g05813 328 PANTHER ZINC FINGER PROTEIN JAGGED 73 314 IPR045320 GO:0003700
Trre2g05813 328 MobiDBLite consensus disorder prediction 277 328 - -
Trre2g05813 328 FunFam Zinc finger protein STAMENLESS 1 73 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05813 Trre-Chr2 63778301 63781584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05813 45 273 C2H2 Transcription Factor Family AT1G13400 42.128 2.94e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05813 - - aprc:113871902 322.398