Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g05798 | ATGAACACCAATAGAACTATAGCTATGTCCACAGCTACAAAGAGAGAATTTGGTACTTCTAATGAAGAAAATGAGCTTAGAAGAGGACCATGGACTCTTGAAGAAGATAGTTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTTAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAATCTTTCTCCTCAAGAACAATTGTTGATCCTTGAACTTCATTCAAAGTGGGGTAATAGGTGGTCAAAAATTGCTCAACATCTACCGGGAAGAACGGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCGCGGCAACTTAACATAGAATCTGGTAGCAAGAGATTCCTTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTACTTCAAAAGATGGAACAGAACACTTCACCAATCTCTGATCACTCTTCTATCACAAACATGAATCATTTTGGAAATTCTTTTGAAGCTTCAACTAGTAATTCAATCTCAACAAGCTTCAATATTCCTTCTATATCTTCATCATCTCATGCACAAAGAGGATTCATAGATGCTTCAAGTACAAATCATGTAAATGATATCTCAACAAGCTTCAATAATCCTTCTTTGGATTTCTTGCAATTTTCACAGCCACTTGAAATTTCAGAAAACTCAAAAAGTGCTCCAAATGTGTTAGAGAACAATGTTTATAACTGTCCAATTCAGGAAAATTACTATATTGATGATACCAATAACTATGGCTTGGAAGGTCTAAACTTTGATACACCTTCTTCAATGGAAACTTATGACTATTCACAGTTTGATTTTCAAACTTCAGGGAGTGGTTGGATATTGGATAACATGGCTAATAGTACTTTGTGGAACATGGATACTATGTGA | 957 | 0.3595 | MNTNRTIAMSTATKREFGTSNEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLSPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFLDAVKCFWMPRLLQKMEQNTSPISDHSSITNMNHFGNSFEASTSNSISTSFNIPSISSSSHAQRGFIDASSTNHVNDISTSFNNPSLDFLQFSQPLEISENSKSAPNVLENNVYNCPIQENYYIDDTNNYGLEGLNFDTPSSMETYDYSQFDFQTSGSGWILDNMANSTLWNMDTM | 318 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g05798 | 318 | ProSiteProfiles | Myb-like domain profile. | 23 | 75 | IPR001005 | - | |
| Trre2g05798 | 318 | SUPERFAMILY | Homeodomain-like | 26 | 122 | IPR009057 | - | |
| Trre2g05798 | 318 | Gene3D | - | 85 | 129 | - | - | |
| Trre2g05798 | 318 | ProSitePatterns | Phosphoglycerate mutase family phosphohistidine signature. | 43 | 52 | IPR001345 | GO:0003824 | |
| Trre2g05798 | 318 | ProSiteProfiles | Myb-like domain profile. | 76 | 126 | IPR001005 | - | |
| Trre2g05798 | 318 | FunFam | MYB transcription factor | 85 | 148 | - | - | |
| Trre2g05798 | 318 | CDD | SANT | 85 | 124 | IPR001005 | - | |
| Trre2g05798 | 318 | CDD | SANT | 30 | 75 | IPR001005 | - | |
| Trre2g05798 | 318 | PANTHER | MYB TRANSCRIPTION FACTOR-RELATED-RELATED | 22 | 200 | IPR044676 | GO:0003700|GO:0006355|GO:0043565 | |
| Trre2g05798 | 318 | Pfam | Myb-like DNA-binding domain | 81 | 124 | IPR001005 | - | |
| Trre2g05798 | 318 | Pfam | Myb-like DNA-binding domain | 28 | 75 | IPR001005 | - | |
| Trre2g05798 | 318 | Gene3D | - | 25 | 81 | - | - | |
| Trre2g05798 | 318 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 23 | 75 | IPR017930 | - | |
| Trre2g05798 | 318 | SMART | sant | 80 | 128 | IPR001005 | - | |
| Trre2g05798 | 318 | SMART | sant | 27 | 77 | IPR001005 | - | |
| Trre2g05798 | 318 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 76 | 130 | IPR017930 | - | |
| Trre2g05798 | 318 | FunFam | Myb transcription factor | 28 | 80 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g05798 | Trre-Chr2 | 63629092 | 63630552 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g05798 | 23 | 218 | MYB Transcription Factor Family | AT1G68320 | 61.215 | 3.10e-87 | 261 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Trre2g05798 | Myb_DNA-binding | 3.3e-15 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g05798 | K09422 | - | gmx:100775834 | 453.366 |