Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05789 ATGGATAACAATCACCATGAACACTACAATAATAAAAGAACAAATACAACTTCCCAAACACGCCTTAAACTCTTTGGCTTCAACGTTCAAGAAGATGAAACCATGCATGATAATAATAATATTCATGACTACTCAACAACAACCAAACCAACTTCTTCTTCAACTTCAACTTCTCCATCAAGATCACCTGATTCCTCCGCCGTCGGTGAAACTTTCCCACCTTCCTCCGGTGAAAGAAAATACGAGTGTCAATACTGTTGTAGAGAATTTGCAAATTCACAAGCACTTGGTGGACACCAAAACGCACACAAAAAAGAACGTCAACAACTCAAACGTGCTCAATTACAAGCTAACCGAAACGCCGCCGTTTCGTTCGTTCGAAATCCTATCATCTCCGCCTTTGCTCCTCCGCCGCATCTATTAGCTCCGCCGGGGTCCATGATGGTTCCATCTTCAAATTCCTCGTGGGTTTACGTTCCACCACGATCCGCTCCTCCTCCGTTCCACGTGTCAGTATCACACGGTTGCGTTTTCCCGTCGGCGAACGGAAACACAAACACCATGATGATGAGTGGTGGTAACAATAATAATGGTGTTAGAGGTGTGAAATCTGCGGGTGCAGGGATGTTTCCGTGTGTTGGCGTTGTAGGGGATTCATCATCCGCATTGTCAACGATGCAGGTACAAGCCCGGGCCCACCATGTAAGGATTGATGGGCCATGTTTGAGTAGGTTCTCAAAAGGTGATAGCGGGCCCAATTTTGATGATGCATTGGGCTTGGATTTACATCTTAGTCTTGCGCCGGCTGCAAATCGATCATACGGCTCGGCTCAGCTTGGCTATTCTAGATACTCTCCTTAG 861 0.4611 MDNNHHEHYNNKRTNTTSQTRLKLFGFNVQEDETMHDNNNIHDYSTTTKPTSSSTSTSPSRSPDSSAVGETFPPSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQANRNAAVSFVRNPIISAFAPPPHLLAPPGSMMVPSSNSSWVYVPPRSAPPPFHVSVSHGCVFPSANGNTNTMMMSGGNNNNGVRGVKSAGAGMFPCVGVVGDSSSALSTMQVQARAHHVRIDGPCLSRFSKGDSGPNFDDALGLDLHLSLAPAANRSYGSAQLGYSRYSP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05789 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Trre2g05789 286 PANTHER ZINC FINGER PROTEIN 5 10 270 IPR044299 GO:0010090
Trre2g05789 286 FunFam Zinc finger protein 6 71 131 - -
Trre2g05789 286 MobiDBLite consensus disorder prediction 1 77 - -
Trre2g05789 286 Gene3D Classic Zinc Finger 64 128 - -
Trre2g05789 286 MobiDBLite consensus disorder prediction 40 72 - -
Trre2g05789 286 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Trre2g05789 286 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05789 Trre-Chr2 63534179 63535039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05789 14 271 C2H2 Transcription Factor Family AT1G68360 44.074 6.61e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05789 - - psat:127098539 405.601