Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05788 ATGGAAGGAACCTCTACACCAGCAATTCGACGTGATCCTTACGAAGTTTTGTCCGTTTCAAAGGAATCAACCGACCAGGAAATTAAAACCGCTTATAGAAAGCTTGCTCTCAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAGTATCTTATCTGACCCAGAGAAGAGAAGGCAGTATGATAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACGATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTTTGAATGGCACAGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCAGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTTGAACAAGATGCAAATGCTGGCTATGGTTTGGCTTTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCGGAATTGAAGCCTGGCACACATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAGTCACATGAAGATACCACCCAAAAACTTAAGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAATCAGAATATAGAAAGGCATTGGCGCGCTATCAGGAAGTGACAGAAAGATATACAAAAGAAAAACAGTCGGTAGACGAGCTTCTGAAACAAAGGGACGGTATCCACTCTACCTTTACCATTGTTAAGCCATCCAATATTAGTGCAAGTGGTAGTAATTTAAGCAATGGAAGTTCGAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATGGAAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTTAATCTTAAGGGTTCGGGCTCGGGTTCTGCTGATAAGAAGTTTATTTAA 1242 0.4082 MEGTSTPAIRRDPYEVLSVSKESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANAGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLKDIEAQILRKRNELRQFESEYRKALARYQEVTERYTKEKQSVDELLKQRDGIHSTFTIVKPSNISASGSNLSNGSSSKISGEDSKGESPGEDGGSDGKDKSGKKKWFNLNLKGSGSGSADKKFI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05788 413 Gene3D DnaJ domain 3 94 IPR036869 -
Trre2g05788 413 MobiDBLite consensus disorder prediction 373 395 - -
Trre2g05788 413 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 8 403 - -
Trre2g05788 413 MobiDBLite consensus disorder prediction 356 372 - -
Trre2g05788 413 SMART dnaj_3 11 69 IPR001623 -
Trre2g05788 413 Pfam DnaJ domain 12 74 IPR001623 -
Trre2g05788 413 CDD DnaJ 12 66 IPR001623 -
Trre2g05788 413 FunFam Chaperone protein dnaJ 16 1 94 - -
Trre2g05788 413 SUPERFAMILY Chaperone J-domain 11 82 IPR036869 -
Trre2g05788 413 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Trre2g05788 413 Coils Coil 282 337 - -
Trre2g05788 413 PRINTS DnaJ domain signature 32 47 IPR001623 -
Trre2g05788 413 PRINTS DnaJ domain signature 14 32 IPR001623 -
Trre2g05788 413 PRINTS DnaJ domain signature 49 69 IPR001623 -
Trre2g05788 413 PRINTS DnaJ domain signature 69 88 IPR001623 -
Trre2g05788 413 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Trre2g05788 413 MobiDBLite consensus disorder prediction 356 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05788 Trre-Chr2 63517634 63521894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05788 3 84 C2H2 Transcription Factor Family AT1G74250 43.678 6.09e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05788 - - tpra:123901008 717.227