Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05783 ATGGTTTCACAGTGCCTCTTCTTGTTTTCATGCTTCGTTACACAACTGCTACTAGCATCAGGTAACTGTCCATCTTCAATTAACTGCGGATTTCTCGGAGAAATTGAATTTCCTTTTACAAGCACACAGCATCCAAATTGTGGCATGTTAGTAATACATGGTTGTGATGACTATGAACCACAATCCAAAAAAACCATACAAAATAACAAAAGATGGTTCGATGTTCTCAAAATCAAACCCTTCACAATTACAATTCGAGACGACCAACTTCATGACTTGTTGCTAAAAAGAAGCTGCAATATTCTAACATACAATTCTATGTTCACGGTCAACACGCCTTTGGTTTCTTCTCGTCTAGAAAATCCGGTAACTGTTTTCGGATGTAACAGTAACAACACAGTCGATCTTCAACAATACTATTCCATTTCTAATTCTACTTCGATTTGTAGAAACGAAAACGATACTTTGAATGGTGTTTCAGATTCAGATATAAAGAGTAATAAAGCTATTGTGGTTATAATTGATGATACTATCTCTTCAAACTCTAATCATCTTAAAGGATGTTCAAATGTTGATCTTCCAACCGGTTCCAAGGTTAACCATCTTGATCCAGAAGATCTTTTTAACTTCCTAAGTGGCGATATTGCAATCAAAATACAAGTTTCTCAGAATTGTTCTACATGTCATGATCTTTATGGAGGTCAATGTCAACTTGATAACACTGGCCAGTTTTATTGTCACCAAGGGAAATCTAAAAAGACCCATCTTACAGTGGCAGCAGCTACATCTTCTGCTGGAGTACTTGGAGTTATGGTTATTTTGGCTTGGTTCTTGAGAAGACGCTTTATCAACAATAAAAACCCTCCATACCAAATAATAGAGTTGTTTCTTAAAAACCATGGTCACCTTGCAGCTAAAAGATTCACTTATGCAGAGATAAAGAAGGCAACTAATTCATTCAGAAACAAACTAGGCCAAGGAGGATATGGCAGTGTATATAAAGGTACATTACAAGATGGAAGTCTCGTGGCAGTTAAAGTATTAAGCGAATCCAATGGTAACGGTGAGGAATTCATAAATGAAGTTGCTAGTATCAGTGTCACTTCTCATGTTAACATTGTTAGTTTGTTAGGGTTCTATCTTGAAGGTTCTAAAAGAGCTTTGATATATGATTGCATGCCTAATGGATCACTTGAGAAGTTCATATATGAAGACAAAGATCCATTAAATCTAATTCTTCAATTAAGTTGCAAAACTATCTACAATATTGCAATTGGCGTTGCTCGAGGATTAGAGTACTTGCACAAAGGTTGCAATACTAAAATCTTGCATTTTGATATAAAACCTCATAACATATTGCTAGATGATGATTTTTGTCCTAAGGTTTCGGATTTTGGACTCGCAAAAGTATGTCCAAGAAAAGACAGTATCATATCCTTATTAGGTGCTAGAGGTACTGCAGGGTACAGCTATGGAATGATGGTTTTAGAAATGGTTGGGGGAAAACAGAATAACAATATCATTGATATTGAACGGTCGAGTGAAATTTATTTTCCACACTGGGTTTACAAGCGAATTGAACTGAATCAAGAACCTAGATTACGAAGCATTAAAAATGAATTTGATAAAAAGATTGTACAAAAGATGATTATAGTAAGCTTATGGTGCATCCAAACTGATCCATCACATAGGCCTGCAATGAGTAAAGTGGTAGATATGATGGAAGGTAGCTTAGAATCTTTGCAAATACCACCAAAACCTTGTCTCTCTTCACCTCCTAGGTCTCCCTCAAGATCATCAGATTATAACACACACACATCTCAGGATTTGTATCATTCAGGCACAGTCCATACCACTGAATGTGAACCTCTAATCATACTTGGTAGAGCTAGTGGGAGATCACCATGTTAG 1911 0.3632 MVSQCLFLFSCFVTQLLLASGNCPSSINCGFLGEIEFPFTSTQHPNCGMLVIHGCDDYEPQSKKTIQNNKRWFDVLKIKPFTITIRDDQLHDLLLKRSCNILTYNSMFTVNTPLVSSRLENPVTVFGCNSNNTVDLQQYYSISNSTSICRNENDTLNGVSDSDIKSNKAIVVIIDDTISSNSNHLKGCSNVDLPTGSKVNHLDPEDLFNFLSGDIAIKIQVSQNCSTCHDLYGGQCQLDNTGQFYCHQGKSKKTHLTVAAATSSAGVLGVMVILAWFLRRRFINNKNPPYQIIELFLKNHGHLAAKRFTYAEIKKATNSFRNKLGQGGYGSVYKGTLQDGSLVAVKVLSESNGNGEEFINEVASISVTSHVNIVSLLGFYLEGSKRALIYDCMPNGSLEKFIYEDKDPLNLILQLSCKTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDDDFCPKVSDFGLAKVCPRKDSIISLLGARGTAGYSYGMMVLEMVGGKQNNNIIDIERSSEIYFPHWVYKRIELNQEPRLRSIKNEFDKKIVQKMIIVSLWCIQTDPSHRPAMSKVVDMMEGSLESLQIPPKPCLSSPPRSPSRSSDYNTHTSQDLYHSGTVHTTECEPLIILGRASGRSPC 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05783 636 Gene3D Phosphorylase Kinase; domain 1 297 391 - -
Trre2g05783 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 292 595 IPR045874 GO:0004672
Trre2g05783 636 SUPERFAMILY Protein kinase-like (PK-like) 302 574 IPR011009 -
Trre2g05783 636 ProSiteProfiles Protein kinase domain profile. 318 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05783 636 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Trre2g05783 636 CDD TM_EGFR-like 253 286 - -
Trre2g05783 636 FunFam Os07g0541700 protein 393 483 - -
Trre2g05783 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Trre2g05783 636 Gene3D Transferase(Phosphotransferase) domain 1 489 582 - -
Trre2g05783 636 Gene3D Transferase(Phosphotransferase) domain 1 393 488 - -
Trre2g05783 636 SMART serkin_6 318 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05783 636 Pfam Protein kinase domain 322 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05783 636 FunFam serine/threonine-protein kinase PBS1-like 294 392 - -
Trre2g05783 636 MobiDBLite consensus disorder prediction 593 609 - -
Trre2g05783 636 MobiDBLite consensus disorder prediction 582 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05783 Trre-Chr2 63489407 63492077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05783 258 589 Receptor kinase-like Gene Family AT4G18250 49.722 7.37e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g05783 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05783 - - psat:127098536 1043.49