Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05780 ATGATCACACAATTCATAACATTAGTAATGTCTTGGTTTTTCATTTTCAAATCATTACTTTTCTCCCTGCTTATGCTTCAGGTCTCAGCTCAAGATGGAAGATGTCCAACCTCTTTTAGTTGTGGATATCTTGGCAATATTACCTTCCCTTTCACAGTTACACAACACCCTCACTGTGGCGTATTGGCCATAAGTGGTTGTGATAACGGTATAGCTTATCCCAAAACAATCCAACTAGGCAAGCGACCATCAAATCAGTCTTTCATAGTTACATATGTGGATCATGATACTATCACGGTCAGAGATGATGTTAAACGGGAGAAGTTGAAATTAAAAGATTGCCAGGTCTTTAACAATTTTACTGTTCCTCCCACCTCTCCTTTAGCATCTTTCTATATCAAATATAATATAACTATGTTCAAGTGCAACCACTCCCATAATATCACCCTTCACGGGAATTTTTCTTTTTATAAGTATACAAACTGTTCCGGTTATAATCTCTATTATGACCTTCTAAATAGTGTGAGACCTCGCGGTTTTAAAGTGCCAAGTTCTTTGGCACAGTGTACACAGTGTCAGGTTGCAATAAGAGACTTCCCCACAACTGACCCCTTTGAATTTGTATCTCCTGAAATCTCCGTTGAAGTACAATTATCTGATAATTGTAACAAGTGTCTTCGTCACCAAGGGGGGCAATGTCAACTTGACAATCAAGGAAAATTCTTCTGTGCCCAAGGGAGTAGAAACTGGCTTGTGATTGTACCAAAAAAGAAAAGAAACAGGCTTGTGAAAATATTGCTACTAGGAGTTGGAATAGTTGTTACAGTAGTAGTAGCTCTATTGCTACTAGTGGTCAAGAATCACAAGATCTACTATACAAGATGGAAGGGTAAAAATCCAACCAATCTAGTCATTGAGGTATTTTTGAAGAAACATGAATCCCTTCAAACCAAGAGGTATTGTTACTCTGAGATAAAGAAAGTAACCAACTCCTTCAAAAATAAATTAGGCCAGGGGGGATTCGGCAGTGTATACAAAGGACAGTTAGATGATGGACGTTATGTTGCAGTGAAGATCCTAAATGAATTGAAGGATAGTGGTGAGGAATTCATGAATGAAGTTGCAAGTATATGTGGAACTTCTCATGTCAACATTGTTACTCTTCTTGGGTTTTGCTTGGAAGGTTCCAAACGAGCTTTAGTTTACGAGTTTATGCATAATGGCTCTCTTGAGAAGTTTATCTTTGAGGAAAATGACCATATTCCAGATCTCCAATTGGACTGCCAAACTTTGTACCACATCGCAATTGGTGTAGCTCGAGGGCTAGAATACCTGCACAAAGGCTGCAATACTAGAATATTACATTTTGACATAAAGCCTCATAACATTCTTCTGGACAAGAATTTCAACCCCAAAATTTCAGATTTTGGACTTGCAAAGATTTGTGCAAGAAAAGAAAGTATGGTATCAATGGTATCAATATTTGGTGCTAGAGGAACGGCAGGATATATTGCCCCCGAGGTATTTTCTAGGAATTTTGGTGCAGTATCTCATAAGTCAGATGTCTACAGTTATGGAATGATGGTCATGGAAATGGTCGGAAGGAGAAAAAATATCAACACTGAAGTTGACCGATCGAGTGAAATATATTTTCCTCATTGGATTTACAACCGTCTTGATTCTAATCAAGATCTTGGTTTACGGAATATAAGAAGTGAAATTGATGACGAAAAGGTGAGAAAGATGACAATAGTGGCTCTATGGTGCATACAAACCAATCCTTCAACTCGACCTGATGTAACTAAAGTGGTGGAGATGCTAGAAGGTAGAGTAGAGTTGTTGCCAATGCCACCTAAACCCTTTTTGTCTTCTCCTTCAAACTCTCATGCCCATTTCTCAAGTGAGACACAGACCATAGAGTCCATGAGAATGCTAGATGCAGAACAACGGGATCATTCCTAG 1962 0.3858 MITQFITLVMSWFFIFKSLLFSLLMLQVSAQDGRCPTSFSCGYLGNITFPFTVTQHPHCGVLAISGCDNGIAYPKTIQLGKRPSNQSFIVTYVDHDTITVRDDVKREKLKLKDCQVFNNFTVPPTSPLASFYIKYNITMFKCNHSHNITLHGNFSFYKYTNCSGYNLYYDLLNSVRPRGFKVPSSLAQCTQCQVAIRDFPTTDPFEFVSPEISVEVQLSDNCNKCLRHQGGQCQLDNQGKFFCAQGSRNWLVIVPKKKRNRLVKILLLGVGIVVTVVVALLLLVVKNHKIYYTRWKGKNPTNLVIEVFLKKHESLQTKRYCYSEIKKVTNSFKNKLGQGGFGSVYKGQLDDGRYVAVKILNELKDSGEEFMNEVASICGTSHVNIVTLLGFCLEGSKRALVYEFMHNGSLEKFIFEENDHIPDLQLDCQTLYHIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDKNFNPKISDFGLAKICARKESMVSMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVMEMVGRRKNINTEVDRSSEIYFPHWIYNRLDSNQDLGLRNIRSEIDDEKVRKMTIVALWCIQTNPSTRPDVTKVVEMLEGRVELLPMPPKPFLSSPSNSHAHFSSETQTIESMRMLDAEQRDHS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05780 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Trre2g05780 653 Pfam Protein kinase domain 333 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05780 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 305 628 IPR045874 GO:0004672
Trre2g05780 653 FunFam S-receptor-like serine/threonine-protein kinase 304 404 - -
Trre2g05780 653 SUPERFAMILY Protein kinase-like (PK-like) 313 608 IPR011009 -
Trre2g05780 653 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Trre2g05780 653 SMART serkin_6 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05780 653 ProSiteProfiles Protein kinase domain profile. 330 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05780 653 FunFam PR5-like receptor kinase 405 618 - -
Trre2g05780 653 Gene3D Transferase(Phosphotransferase) domain 1 405 619 - -
Trre2g05780 653 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05780 Trre-Chr2 63474782 63477374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05780 2 635 Receptor kinase-like Gene Family AT5G38260 36.119 9.31e-122 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g05780 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05780 - - pvu:PHAVU_007G030100g 696.812