Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05778 ATGCTACTTAGTAATGGGTACCAAGGAGATTGTCCACCTTCATTTAGTTGTGGATTCCTTGGCAATATCAGTTTCCCTTACACTACAACACAACACCAAGACTGTGGCTTATTGCCAATACATAATTGTGATGATGATGACTCACAAAAGCCTAAAATTATCCAATTACAGAATAAAGGGAAATGGTTTGAGTTTGAGATTGAATCTGTAACTCCTCTTGAGTTTCAGGGTGGTAGTATTACTACTACTTCTACTTGTATTTTTAGAGACAATAATCTATACAAACTTCTTCAATCCAAAAGTTGTGAATCTTTCAATTATAATTATACTTTTCCTCCTACCTTTGGATTTGCTTCTTTTCGTATGAAAACTAACACAACCTTGTTCATGTGCAACCGTACCCTCCATATCAACCCTCCAACATATATGCATAACTACACAAAATGCCCTCTCTATGATCTCTACTACCAGCAGAGTTATATTGATGATGCGTCTCGGAGTGCTTTTACAGCTTGTGCAAATGTCTTGCTTCCGAATAAAGATTTCGCTAATGCTGACGACCCTTTTACTATCCTAACTTCTGATATCCCAACTGAAGTAAATATAACAGAAGAATGTGCATATTGTCACTTCAACCAAAGAGGGAAGTGTCAAATTGACAGCAATGACAGATTTAATTGTGCTGATTCTGACAGTTATGATAAAACTGGAAAGAATACACCGATTGCAGATAGAACCGGAAAGAAGATGCCCATAGCAGCAACAGCGGTCCTGGTGGTTGTTGGAGTTGCAGTACTGATGTGGTTGGCTTACTGCATTAGGAAAAAGATCTTTGCTCTAGCATTACTTTTGTTCAGGAAAGAAAATTTAACAAATCGTATCATTAAGGAGTATTTGAAAGAACACGGACATCTTCCAGCTGCTAGAGACAAGAATCTCTACAAAATGCTGCAAAACAGAAGTTGTGATGCTTTCAGATATAATTATACTCTTCCTCCCACCTCTCACTTTGTTTCTTTTCATATGGAATTTCATGCAACCTTGTTCATGTGCAACCGTACTCTCCATGTCAACCCTCCAGCATATATGCATAAGTATACAAAGTGTCCTCTTTCCGATCTCTACTACCAGCCTTACCACTATGATGAAAATGCATCTCAGAGTGCTTTTACAGCTTGTACAAATGTCCACCTTCCGGCTAAAGACTTTGCTGACTCTGACGATCCTTTTAGTTTCGTAACTGCTGATATCCCAATTCAAGTAAGCATAACAAAGGAATGCGCAAATTGTCACTACAACCTAAGTGGACGGTGCAAGCTTGACAGCAACGACAGGTTTTATTGTGCCGACAGTATACTAAATGATAGAAAAGGACTAAGTAAGAATGCCAAACTGGGTATAGCAGCCATGGTGGCTTTTGGAGTTGCAGTGTTGATGTCGTTGACTTACTGCATAAGGAGAACGATCTTCCCCGCGACGTTTCTTTTGTTCCGGAAGGAGAGTTCAGCCCATCAAATTATTGAGGAGTTTTTGAAGGAACATGGACCTCTTCCAGCTACTAGGTACAACTATTCTGATGTCACGAAAATAACAAACTCTTTCAAAAACAAATTAGGCCAGGGAGGATACGGAAGTGTATACAAAGGGAAGTTACATGATAAGCGTACTGTTGCAGTGAAGGTTTTAAGTGAATCAAAAGGCGATGGTGAAGATTTCATTAATGAAGTTGCGAGTATCAGTAGAACTTCACATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGTTTCTAAAAAGGCACTCATATATGAATACATGCCAAATGGATCTCTTGAGAAGCTCATATACGAAGAGAAAAACCCATTGAAGGATGACTTCCAATTGGATTGCAAAACATTGTACGATATTGCAGTTGGTGTTGCTCGTGGACTAGAGTACTTGCACAGAGGGTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCATAATATATTACTTGATGAGGATTTCAGCCCAAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAGTAAAGAAAGCACTGTATCCATATTTGGTGCAAGGGGAACACCGGGGTATATTGCTCCAGAGTTGTTCTCCAGACATTTTGGTGGGGTGTCACATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCGAAGAAAGAACATAAAAGTTGAAGTGGATTGTTCTAGCGAGTTATATTTTCCACATTGGATTTACAAACGTCTTGAATTGAATCAGGATCTTGGACTCAGGTGTATTAAAAATGAAATTGATGAAGAAATGGTAAGGAAAATGACAGTGGTGAGTTTATGGTGCATACAAACTGACCCTACGCATCGACCAGCAATGCATAAAGTAGTGGAAATGCTGGAAGGGAGTCTTCAAGTGCTGGAAATACCACCCAAGCCCTTTCTGTCTTCTCCTTCAACATCCTCAATCCACTTATCATCTGAAATATTATGA 2514 0.3886 MLLSNGYQGDCPPSFSCGFLGNISFPYTTTQHQDCGLLPIHNCDDDDSQKPKIIQLQNKGKWFEFEIESVTPLEFQGGSITTTSTCIFRDNNLYKLLQSKSCESFNYNYTFPPTFGFASFRMKTNTTLFMCNRTLHINPPTYMHNYTKCPLYDLYYQQSYIDDASRSAFTACANVLLPNKDFANADDPFTILTSDIPTEVNITEECAYCHFNQRGKCQIDSNDRFNCADSDSYDKTGKNTPIADRTGKKMPIAATAVLVVVGVAVLMWLAYCIRKKIFALALLLFRKENLTNRIIKEYLKEHGHLPAARDKNLYKMLQNRSCDAFRYNYTLPPTSHFVSFHMEFHATLFMCNRTLHVNPPAYMHKYTKCPLSDLYYQPYHYDENASQSAFTACTNVHLPAKDFADSDDPFSFVTADIPIQVSITKECANCHYNLSGRCKLDSNDRFYCADSILNDRKGLSKNAKLGIAAMVAFGVAVLMSLTYCIRRTIFPATFLLFRKESSAHQIIEEFLKEHGPLPATRYNYSDVTKITNSFKNKLGQGGYGSVYKGKLHDKRTVAVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDVSKKALIYEYMPNGSLEKLIYEEKNPLKDDFQLDCKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDEDFSPKISDFGLAKICPSKESTVSIFGARGTPGYIAPELFSRHFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLRCIKNEIDEEMVRKMTVVSLWCIQTDPTHRPAMHKVVEMLEGSLQVLEIPPKPFLSSPSTSSIHLSSEIL 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05778 837 PANTHER RUST RESISTANCE KINASE LR10-RELATED 504 826 IPR045874 GO:0004672
Trre2g05778 837 Gene3D Transferase(Phosphotransferase) domain 1 607 815 - -
Trre2g05778 837 SMART serkin_6 532 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05778 837 Pfam Protein kinase domain 535 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05778 837 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Trre2g05778 837 FunFam serine/threonine-protein kinase PBS1-like 500 606 - -
Trre2g05778 837 SUPERFAMILY Protein kinase-like (PK-like) 516 808 IPR011009 -
Trre2g05778 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Trre2g05778 837 FunFam PR5-like receptor kinase 607 819 - -
Trre2g05778 837 ProSiteProfiles Protein kinase domain profile. 532 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05778 837 Gene3D Phosphorylase Kinase; domain 1 509 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05778 Trre-Chr2 63462195 63466142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05778 421 834 Receptor kinase-like Gene Family AT1G66910 48.131 8.96e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g05778 Pkinase 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05778 - - tpra:123901115 838.18