Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05776 ATGAATAGCAAAACCCCTTTGTTTATCCTCAAGCCCTTCTCTTCTCCCCTGATTTATTCATACATCACCCTTTTCTATTTCTTTACTAGAACCACTCTATGCTTAGCAGATTCAAATTTTACAGCTTGTGTACCCAAAACATGTGGCAACTTAACTATAAGATACCCTTTCTACATCAAAGGGATACAAGAACCTTTTTGTGGCTACCCTGGTTTTGGTATTTCTTGTGACAACAATATTGGTTTTCCAATCCTTAATCTTACCAATACTTTTTACATAATTAATGAGATTTTCTATCAAAATCAATCATTAAGAGTTTCCAATGCTGTTTTTTCAAGATCAAACATCAACAAAGGTTGTCTTTCACCTAGCTATAACCTTACTTTTCCTATTAGTATGTTCAATCCTGCACATAACCAAACCCAAGTGATTTTGTTCTTTGGATGTGACTCAACAAAGCTACCCAGAACGCTGCAAAGGAACATAATTGGTTGCTCAGCAGAAAACGAAACGAGTTCGGTTGTGGCATTGTATGGAGATGATAAAAATGCAAGCTTTGTGTCAAAGAATTGCAGGGGAGGGGTGGTGTCTGCTATGGTGGAAAATGGCGTGAAAGGAGAGATTGAAGAGTCGCTGAGAAATGGGTTTCTGTTGAATTGGATAGCTGCTGATTGTCGTGAGTGTTACGACAGTGGAGGGAGGTGTGGTTTTGATTCACATATATATAGTTTCAGATGTTACTGTACTGATAGAGTTCATGTTGCAAAATGTGTTCCAGTCGTGAACTCCCAGTCTGTGCATACAGTGACAATAGGTCCAGTGGGCTCGGTGGTTGGAGTTGCATTTGCCTTGCTGATTGTCTTAGTTTGTTGGTTTAGGAAAAAGATCTTCCCTCCCACATTTCTTTTGTTCAGGAAGGACAATCCAACCCATCAAATTATTGAGAAGTTTTTGAAGGAACATGGACCTCTTCCAGCGGCTAGGTACAGTTATTCAGATATCAAGAAAATAACAAACTCTTTCAAAAACAAATTAGGCCAGGGAGGGTACGGAAGTGTATACAAAGGCAAGTTACATGACAAGCGTATGGTAGCAGTGAAGGTTTTAAGCGAATCAAAAGGTGACGGTGAAGATTTCATAAATGAAGTTGCAAGTATCAGTGGAACTTCGCATGTCAACGTTGTTAGACTTTTAGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTAGTATACGAATTTATGCCTAATGGATCTCTTGAAAAGTTTATATACGAAGAGAAAAATCCATTGAAGGAGGAAGGTCAATTGGATTGCAAAACATTGTACGATATTGCAGTTGGCGTTGCTCATGGGTTAGAGTACTTGCACAAAGGCTGCAACACTAGAATCTTACATTTTGACATAAAACCTCATAATATACTAATAGACGATGATTTCTGTCCAAAAATTTCTGACTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCATGAGGGGAACACCAGGATACATTGCTCCAGAATTGTTCTCCAGAAATTTTGGTGGGGTGTCACATAAGTCAGATGTCTACAGTTATGGCATGATGGTTTTAGAAATGGTTGGTCAAAAGAAGAACATCAAAGTTGAAGTGGATTGTTCCAGCGAATTATATTTTCCACACTGGATTTACAAGCATCTTGAATTGAACCAGGATCTTGGACTCAGGTGTATTAAAAATGAAATTGATGAAGAAATGGTAAGAAAAATGACCGTGGTGAGTTTATGGTGCATACAAACCGACCCTTCGCATCGACCAGCAATGCATAAAGTTGTGGAAATGCTGGAAGGGAGTCTTCAAGTGCTGGAAATACCACCCAAACCCTTTATGTCTTCTCCTTCAACATCTTCAATCCATTTATCATCAGAAATATTATAA 1935 0.3845 MNSKTPLFILKPFSSPLIYSYITLFYFFTRTTLCLADSNFTACVPKTCGNLTIRYPFYIKGIQEPFCGYPGFGISCDNNIGFPILNLTNTFYIINEIFYQNQSLRVSNAVFSRSNINKGCLSPSYNLTFPISMFNPAHNQTQVILFFGCDSTKLPRTLQRNIIGCSAENETSSVVALYGDDKNASFVSKNCRGGVVSAMVENGVKGEIEESLRNGFLLNWIAADCRECYDSGGRCGFDSHIYSFRCYCTDRVHVAKCVPVVNSQSVHTVTIGPVGSVVGVAFALLIVLVCWFRKKIFPPTFLLFRKDNPTHQIIEKFLKEHGPLPAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDKRMVAVKVLSESKGDGEDFINEVASISGTSHVNVVRLLGFCLDGSKKALVYEFMPNGSLEKFIYEEKNPLKEEGQLDCKTLYDIAVGVAHGLEYLHKGCNTRILHFDIKPHNILIDDDFCPKISDFGLAKICPRKESIVSIFGMRGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGQKKNIKVEVDCSSELYFPHWIYKHLELNQDLGLRCIKNEIDEEMVRKMTVVSLWCIQTDPSHRPAMHKVVEMLEGSLQVLEIPPKPFMSSPSTSSIHLSSEIL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05776 644 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Trre2g05776 644 FunFam PR5-like receptor kinase 414 626 - -
Trre2g05776 644 ProSiteProfiles Protein kinase domain profile. 339 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05776 644 Pfam Wall-associated receptor kinase C-terminal 179 250 IPR032872 -
Trre2g05776 644 Gene3D Phosphorylase Kinase; domain 1 317 413 - -
Trre2g05776 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Trre2g05776 644 SUPERFAMILY Protein kinase-like (PK-like) 323 615 IPR011009 -
Trre2g05776 644 Pfam Protein kinase domain 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05776 644 SMART serkin_6 339 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05776 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 311 633 IPR045874 GO:0004672
Trre2g05776 644 FunFam serine/threonine-protein kinase PBS1-like 311 413 - -
Trre2g05776 644 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Trre2g05776 644 Gene3D Transferase(Phosphotransferase) domain 1 414 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05776 Trre-Chr2 63454875 63457167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05776 13 641 Receptor kinase-like Gene Family AT1G66910 38.123 1.23e-140 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre2g05776 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05776 - - mtr:11418569 1050.04