Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05761 ATGACCCCTCTTTTTATTTTCAAATCATTAATATTCTTCCAGTTTGTGCTTGTTTCAGCTCAAGATGAAAGATGTCCAACCTCTTTTAGTTGTGGAAATCTTGGTCAGATTACCTTCCCTTTCACAGTCACAGAAAGCCCTCACTGTGGCATTTTGGCCATAAGTGGTTGTGATAATAACGGTATAGCTTCTCCCAAAACCATCCAACTAGGCAAGCCACCATCAAATCAGTCTTTCATAGTTACATATGTGGATCATGATACCATCACAGTCGAAGATGGTGCTCTACGGGAGAAGTTGCAATTAAAAGATTGCCATGCCTTTAACAACTTTGTTGTTCCTCCCACCTCTCCTTTAGCATCTTTCTATATCAAATATAATACAACTATGTTCAAGTGCAATCACTCCCTTAATATCACCCTTCACGGGAATTTTTCTTTTTATAAGTATACAAATTGTTCCGGTTATAATCTCTATTATGACCTTCTAAATAGTGTGAGACCTCGCGGTTTTAAAGTGCCAAGTTCTTTGGCACAGTGTACACAGTGTCAGGTTGCAATAAGAGACTTCCCCACAACTGACCCCTTTGAATTTGTATCTCCTGAAATCTCCATTGAAGTACAATTATCTGATGATTGTAACAAGTGTCTCCGTCACCAAGTGGGGCAATGTCAACTTGACAATCAAGGAAAATTCTTCTGTGCCCAAGTTGCAGAGCATAAAAGATTGGCTTGGAAGTTAGGGCTTGGCATTGGACTCCTTGTTGTCATTATTATAACTGGGTTGCTGATTATATGGCGCTGCAAGCGATGCGTTCCTGATTTCTACTCAAAGAAATACACAGAGAGTGGCAGTGTCTACCATGGGGTACCAGTCTTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAACTTGGAGAAGGAGGATTTGGGACGGTTTATTATGGAAAACTCAAAGATGGTCGTGAAGTTGCTGTGAAGCGCCTATATCAGCACAACTTTAAACGAGTTGAACAGTTCATGAATGAAATCAAAATCCTCACTCGCTTGCGCCACAGAAATCTAGTGTCTCTCTATGGCTGCACTTCACATCAAAGTCATGAACTATTGCTTGTCTATGAATACATTTCAAATGGAACTGTCGCCAGTCATCTGCGTCGTGAATCCGAATGA 1191 0.4022 MTPLFIFKSLIFFQFVLVSAQDERCPTSFSCGNLGQITFPFTVTESPHCGILAISGCDNNGIASPKTIQLGKPPSNQSFIVTYVDHDTITVEDGALREKLQLKDCHAFNNFVVPPTSPLASFYIKYNTTMFKCNHSLNITLHGNFSFYKYTNCSGYNLYYDLLNSVRPRGFKVPSSLAQCTQCQVAIRDFPTTDPFEFVSPEISIEVQLSDDCNKCLRHQVGQCQLDNQGKFFCAQVAEHKRLAWKLGLGIGLLVVIIITGLLIIWRCKRCVPDFYSKKYTESGSVYHGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNFKRVEQFMNEIKILTRLRHRNLVSLYGCTSHQSHELLLVYEYISNGTVASHLRRESE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05761 396 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 394 IPR044652 GO:0004672
Trre2g05761 396 Pfam Protein tyrosine and serine/threonine kinase 308 394 IPR001245 GO:0004672|GO:0006468
Trre2g05761 396 SUPERFAMILY Protein kinase-like (PK-like) 281 394 IPR011009 -
Trre2g05761 396 FunFam receptor-like protein kinase FERONIA 274 381 - -
Trre2g05761 396 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Trre2g05761 396 Gene3D Phosphorylase Kinase; domain 1 277 381 - -
Trre2g05761 396 ProSiteProfiles Protein kinase domain profile. 305 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05761 Trre-Chr2 63358231 63360219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05761 29 395 Receptor kinase-like Gene Family AT1G25390 39.323 1.08e-62 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre2g05761 PK_Tyr_Ser-Thr 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05761 - - gmx:100790240 420.239