Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05751 ATGGACTCAAACACTTCTAGTTTTCTTTTGAACTCATCAACTTTTCACTCAGTTTTCTATCAGGATAAACAAGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAAGTGTTCAACATGATACTTATCATTCTTCTGCCAATTTGTATGATGTTGACCTTATGGATTGGCCTAATATGAAGAATTCAAGCACAACACATTCTAGATCTGCACATGAAAACTTTGATGAAGAAATAGAGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAAGTTAACATGGATGGGGTCTCTATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGATATTCAAGTCTATCAATTCAATTAGAACACATGTTTGGTAGCCAATCAGTTTCTGGTATAAGATTGTTTGAATCTGGATCAGAATATTCATTATTCTACAAGGACAGAGAAGATAATTGGAGGACTGTTGGTGATGTTCCATGGAAGGAGTTTGTAGAATGTGTGAAAAGGCTAAGGATTGCACGAAAGAATGGTGGCTATGTTAACATTTCATCTTAA 552 0.3605 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGSVQHDTYHSSANLYDVDLMDWPNMKNSSTTHSRSAHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLSIQLEHMFGSQSVSGIRLFESGSEYSLFYKDREDNWRTVGDVPWKEFVECVKRLRIARKNGGYVNISS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05751 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 174 IPR003311 GO:0005634|GO:0006355
Trre2g05751 183 Pfam AUX/IAA family 61 174 IPR033389 -
Trre2g05751 183 SUPERFAMILY CAD & PB1 domains 88 171 - -
Trre2g05751 183 Gene3D - 82 180 - -
Trre2g05751 183 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05751 Trre-Chr2 63294212 63295726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05751 83 171 B3 DNA Binding Superfamily AT1G19220 37.079 4.67e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre2g05751 AUX_IAA 4.3e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05751 K14484 - gmx:100777024 320.472