Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05730 ATGCATAACAACGACGTTTGTTCTCCGTTTGCTTCGTTGTACTCTGCTCTTACTAATGAAAATCTTCCATCACTCGCCGGAAACTGCAGCAACGGCGGTGGCGTTTCGCTGATACAAAAACATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGCCTCGTGGAGACTTCCAAAGAGGTTGAAGCTCTGCAGCAAGAGAACGGACAGCTCCGTGCGGTGAACAAGGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAGGCTTCACTGGAGAACCGATTTGGCGGTGGCGGATCCTCCGGCCAGACTCAATCGTCTCCGTTTGATCTGATGCACGGTTTCCATAACTTGAATCTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATAGCAATAACATCAATAATAATAACAAGGAGCTTCAGGAAGTTTCCGATGAGAGTCCAACGAGTGTGATAGACAATAACGGTGTTGAAACGGAGAGGTTTTCGCTGCCGAAGAGCATATCTGTGAGATCCAATGGCTACTTGAAGGTTGCTCAGCCTCCGGCCGTCGTAACTAACAATAATGCTGTTCGCACCAAGGGCGCTAACCGCTCCCGTGCCTCCTCCACTCAAGCTTCGGATACAGTTCAAAAGGTATTTGTACGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAAACTGGCACTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTCGTGTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTCTATCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 963 0.4933 MHNNDVCSPFASLYSALTNENLPSLAGNCSNGGGVSLIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFGGGGSSGQTQSSPFDLMHGFHNLNLGDGKENCADWNSNNINNNNKELQEVSDESPTSVIDNNGVETERFSLPKSISVRSNGYLKVAQPPAVVTNNNAVRTKGANRSRASSTQASDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPKPRSMKLER 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05730 320 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 262 IPR000571 GO:0046872
Trre2g05730 320 Gene3D - 231 269 - -
Trre2g05730 320 Gene3D - 270 306 - -
Trre2g05730 320 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Trre2g05730 320 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Trre2g05730 320 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 310 IPR045877 GO:0003729
Trre2g05730 320 Coils Coil 55 82 - -
Trre2g05730 320 SUPERFAMILY CCCH zinc finger 270 304 IPR036855 GO:0046872
Trre2g05730 320 FunFam zinc finger CCCH domain-containing protein 15-like 230 269 - -
Trre2g05730 320 FunFam Zinc finger protein 36, C3H1 type-like 1 270 306 - -
Trre2g05730 320 SUPERFAMILY CCCH zinc finger 233 268 IPR036855 GO:0046872
Trre2g05730 320 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Trre2g05730 320 SMART c3hfinal6 274 301 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05730 Trre-Chr2 63120734 63123063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05730 37 315 C3H Transcription Factor Family AT1G68200 51.228 1.27e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre2g05730 zf-CCCH 2.5e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05730 K18753 - gmx:100796550 466.463