Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05708 ATGGCTTCACGGAGAATCGTTTCGTCTCTGATACGATCATCCCTCCGTCCATCTCATTCAAAATCATCCATAACCGCTTCAACATCACGTCTCTCTTCTCAATCACGCGCATCTCCAAATGCATACATTTTCAACCGTATTACTCAATACGCCACGGCCGCCGCTAAAGCAGCCGGACCTACCGCTCCTCCTCCTCCGCCTAAGAAACTTACTGACGGTTCTGGAAAGATCACCGATGAGTATACCGGTAAAGGCGCCATTGGTCAAATTTGTCAGGTTATTGGTGCTGTCGTCGATGTCAGATTTGAAGAAGGTTTGCCTCCGATTTTGACCGCGCTTGAGGTTCTAGATCATTCTTCACGCTTGGTTTTGGAAGTTGCACAGCATTTGGGTGAAGGTATTGTCAGAACTATTGCTATGGATGCCACTGAAGGATGTGTTCGAGGGTGGCGCGTGCTCAATACCGGCTCTCCCATCAGTATTCCTGTGGGCAGGGCTACCCTTGGACGTATCATGAATGTTATTGGAGAACCTATCGATAACAAAGGCGAATTCAAAACCGAGCATTATTTACCTATTCATAGAGAAGCTCCGCCTTTTGTTGAGCAAGCAACTGAACAACAAATCCTTGTTACTGGTATCAAGGTTGTTGACCTGCTTGCACCATATCAAAGAGGAGGAAAGATTGGTTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTTCTTATTATGGAACTTATCAACAATGTTGCAAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTTGGTGAACGAACCCGAGAGGGTAATGACTTGTACCGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGGTGATCAGCAGGCTGAAAGCAAATGTGCTCTTGTATATGGTCAAATGAACGAACCCCCTGGTGCTCGTGCCCGTGTTGGTCTCACTGGTCTTACCGTTGCTGAACACTTCCGTGACGCCGAAGGACAAGATGTGCTTCTTTTTGTTGACAACATTTTCCGCTTCACTCAAGCAAATTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACCTTATCTACTGATCTTGGAGGTCTTCAAGAACGTATTACAACCACCAAGAAGGGTTCAATTACATCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGTTATCAAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCCCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTAAGTGAAGATGATAAATTAACTGTTGCTCGTGCCCGTAAAATTCAACGTTTCTTAAGCCAACCTTTCCATGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTAAAAGTTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTGCCTGAACAGGCATTTTACATGGTTGGTGGTATTGATGAAGTCATTGCAAAGGGAGAAAAGATTGCTAAGGAAAATGCCACGTCTTAA 1680 0.4488 MASRRIVSSLIRSSLRPSHSKSSITASTSRLSSQSRASPNAYIFNRITQYATAAAKAAGPTAPPPPPKKLTDGSGKITDEYTGKGAIGQICQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGIVRTIAMDATEGCVRGWRVLNTGSPISIPVGRATLGRIMNVIGEPIDNKGEFKTEHYLPIHREAPPFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDQQAESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTKSFQGVLDGKYDDLPEQAFYMVGGIDEVIAKGEKIAKENATS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05708 559 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Trre2g05708 559 FunFam ATP synthase subunit beta 437 556 - -
Trre2g05708 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 437 553 - -
Trre2g05708 559 PANTHER ATP SYNTHASE 76 555 - -
Trre2g05708 559 CDD ATP-synt_F1_beta_N 86 159 - -
Trre2g05708 559 MobiDBLite consensus disorder prediction 1 32 - -
Trre2g05708 559 Gene3D - 437 559 IPR024034 -
Trre2g05708 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 90 156 IPR004100 GO:0046034|GO:1902600
Trre2g05708 559 CDD F1-ATPase_beta_CD 160 439 - -
Trre2g05708 559 Gene3D - 159 436 IPR027417 -
Trre2g05708 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 425 434 IPR020003 GO:0005524
Trre2g05708 559 FunFam ATP synthase subunit beta 159 436 - -
Trre2g05708 559 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Trre2g05708 559 NCBIfam F0F1 ATP synthase subunit beta 87 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Trre2g05708 559 CDD ATP-synt_F1_beta_C 441 548 - -
Trre2g05708 559 SMART AAA_5 225 497 IPR003593 GO:0016887
Trre2g05708 559 PIRSF ATPase_subunit_beta 4 558 - -
Trre2g05708 559 Gene3D - 76 158 - -
Trre2g05708 559 MobiDBLite consensus disorder prediction 55 74 - -
Trre2g05708 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 440 IPR027417 -
Trre2g05708 559 FunFam ATP synthase subunit beta 76 158 - -
Trre2g05708 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 213 434 IPR000194 GO:0005524
Trre2g05708 559 Hamap ATP synthase subunit beta [atpB]. 85 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Trre2g05708 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 84 158 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05708 Trre-Chr2 62893834 62897283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05708 155 495 Primary Pumps ATPases(2) AT1G20260 28.571 3.63e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05708 K02133 - gmx:100789705 944.11