Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g05707 | ATGGCTTCACGCAGACTAGTATCTTCTCTGATTCGTTCTTCTCTTCGTCGATCTTCATCCAAACCCTCAATTTCCGCCTCAACATCCAGACTCACATCTCAATCTCGCGCTTCCCCCTATGGTTACCTTTTGAATCGTGTCGCCGATTATGCAACTGCGGCCGCAGCCGCCACAGCTCCATCTACGCCACCGGCGAAAAAGGAGGTTCCCGGAGGTGGTAAAATCACTGATGAGTTCACTGGTAAAGGCGCGATCGGACATGTTTGTCAAGTTATTGGTGCCGTAGTTGACGTTAGATTCGAGGAGGGTTTGCCTCCGATCTTGACCGCACTTGAGGTTTTGGATCATTCTTCACGGTTGGTGTTGGAAGTTGCACAGCATTTGGGTGAAGGTGTTGTGAGAACTATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGATCTCCTATCAGTGTTCCTGTTGGTAGGGCTACCCTTGGTCGTATCATGAATGTTATCGGAGAACCTATTGATGAAAAGGGCGAATTCAAAACCGAGCACTATTTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAGCAAGAGATCCTTGTTACTGGTATCAAGGTTGTTGACCTGCTTGCACCATACCAAAGGGGAGGAAAGATTGGGTTGTTTGGTGGTGCCGGTGTAGGAAAGACTGTGCTTATTATGGAGCTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGAGAGGGTAATGATTTGTACAGAGAAATGATTGAAAGTGGTGTTATTAAGTTGGGTGATAAGCAGAGTGAAAGCAAATGTGCCCTTGTGTACGGTCAAATGAACGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGACTTACTGTTGCTGAACATTTCCGTGATGCTGAAGGACAAGATGTGCTTCTTTTTGTTGACAACATTTTCCGTTTTACTCAAGCTAACTCAGAGGTGTCTGCCTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACCGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGACGCTACAACAGTGTTGTCAAGACAGATCTCTGAGCTTGGTATCTATCCTGCTGTTGACCCATTGGATTCAACATCTCGTATGCTTTCTCCTCTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAGGATATCATTGCAATTTTGGGTATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAAATTCAACGGTTCTTAAGCCAGCCTTTCCATGTGGCTGAAGTTTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTCAAAGTTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTTTCCGAGCAGGCATTTTACATGGTTGGTGGTATTGATGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAATCAGCAACATAG | 1671 | 0.4644 | MASRRLVSSLIRSSLRRSSSKPSISASTSRLTSQSRASPYGYLLNRVADYATAAAAATAPSTPPAKKEVPGGGKITDEFTGKGAIGHVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDEKGEFKTEHYLPIHREAPAFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTQSFQGVLDGKYDDLSEQAFYMVGGIDEVIAKAEKIAKESAT | 556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g05707 | 556 | FunFam | ATP synthase subunit beta | 1 | 50 | - | - | |
| Trre2g05707 | 556 | CDD | ATP-synt_F1_beta_C | 439 | 546 | - | - | |
| Trre2g05707 | 556 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 211 | 432 | IPR000194 | GO:0005524 | |
| Trre2g05707 | 556 | Hamap | ATP synthase subunit beta [atpB]. | 83 | 550 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Trre2g05707 | 556 | Gene3D | - | 435 | 556 | IPR024034 | - | |
| Trre2g05707 | 556 | PANTHER | ATP SYNTHASE | 67 | 553 | - | - | |
| Trre2g05707 | 556 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 423 | 432 | IPR020003 | GO:0005524 | |
| Trre2g05707 | 556 | Gene3D | - | 157 | 434 | IPR027417 | - | |
| Trre2g05707 | 556 | Pfam | ATP synthase F1 beta subunit | 1 | 46 | IPR020971 | GO:0000275|GO:0005524|GO:0006754|GO:0016887 | |
| Trre2g05707 | 556 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 82 | 156 | IPR036121 | GO:0046034|GO:1902600 | |
| Trre2g05707 | 556 | FunFam | ATP synthase subunit beta | 74 | 156 | - | - | |
| Trre2g05707 | 556 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 88 | 154 | IPR004100 | GO:0046034|GO:1902600 | |
| Trre2g05707 | 556 | NCBIfam | F0F1 ATP synthase subunit beta | 85 | 550 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Trre2g05707 | 556 | FunFam | ATP synthase subunit beta | 157 | 434 | - | - | |
| Trre2g05707 | 556 | FunFam | ATP synthase subunit beta | 435 | 554 | - | - | |
| Trre2g05707 | 556 | CDD | ATP-synt_F1_beta_N | 84 | 157 | - | - | |
| Trre2g05707 | 556 | PIRSF | ATPase_subunit_beta | 3 | 556 | - | - | |
| Trre2g05707 | 556 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 158 | 438 | IPR027417 | - | |
| Trre2g05707 | 556 | Gene3D | - | 74 | 156 | - | - | |
| Trre2g05707 | 556 | CDD | F1-ATPase_beta_CD | 158 | 437 | - | - | |
| Trre2g05707 | 556 | Gene3D | ATP synthase, F1 beta subunit | 1 | 50 | IPR042079 | - | |
| Trre2g05707 | 556 | SMART | AAA_5 | 223 | 495 | IPR003593 | GO:0016887 | |
| Trre2g05707 | 556 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 435 | 551 | - | - | |
| Trre2g05707 | 556 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g05707 | Trre-Chr2 | 62889161 | 62893120 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g05707 | 121 | 493 | Primary Pumps ATPases(2) | AT1G20260 | 28.715 | 2.97e-29 | 119 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g05707 | K02133 | - | gmx:100789705 | 942.569 |