Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05687 ATGTTTTTAATTTGCTTGCAGTCAATACCAAGTATTTTGCTTGGTGAGTTCCTGAGAAAGCATCTTATCATCGATTTGGTTTGTTGCACTGATGATGGAATGAGTTGGCCATTGAAGGTGATGAAGCTTCATGATCCTTATAAGACGATATTGGGTGATACATGGATGGAGCTGTGTCAGTCCAACAATTTGAAAGGAGGTGATGTTATTCGGTTCAAGTTTGATTCAGAATTTAGGTGTCATGTCTACAAAGTTGGCGAGTATTGA 267 0.3858 MFLICLQSIPSILLGEFLRKHLIIDLVCCTDDGMSWPLKVMKLHDPYKTILGDTWMELCQSNNLKGGDVIRFKFDSEFRCHVYKVGEY 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05687 88 CDD B3_DNA 8 84 IPR003340 GO:0003677
Trre2g05687 88 Gene3D - 5 86 IPR015300 -
Trre2g05687 88 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Trre2g05687 88 Pfam B3 DNA binding domain 16 82 IPR003340 GO:0003677
Trre2g05687 88 SUPERFAMILY DNA-binding pseudobarrel domain 22 83 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05687 Trre-Chr2 62743968 62744234 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g05687 B3 9.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05687 - K06517 tpra:123890810 68.1662