Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05668 ATGGACGAAAAGCACAATTACATACATGGCACAATACCAAGTAGGTCTGCAAGCGCGTTCAAGGATGTCTTGCAAGAAGGGAAGGTGTATGAGATTGGTATTTTCAGAGTCTCGAGAAATAAGAGAACATATATTATAGTTGAAAATAATACTTCCATGCTGCAATTCTCTGGTTCAACAACATTTACGCCTCAGGAATATGATGATGGGAAAATTCCACGCTATGTTTTTGAATTCGTTCCTTTTGAAGAGTTGCACAAGCGATTCAATAAGGAGGCTCACGCAGATGTAATTGGGGTTATTATTGATATGACTCCAATTGAGGAGAGGACAACTGCTTATGGAAAGTCTGATATCATGTCACTCTATTTAAGGAATAAAAGTGGAGACATATTCAAGGTCACATTGTGGGGTGACTTTGTTTCAATGTTTGATAAAAAATTCAAACAATACAAGCATGCTGCTCTTGAGCCAAACGTAGCAATTTTCACATCCATCTTGGTTAAACAATTTCAAGGTGAGTTTTTGGTTCAATCTTCAAGATCCACAACAATTTATATCAACATCGACATTCCAGAAGCTATTGAGCTCGCTCAAGCGTCCAAGGCTGCCAATGTCATGGATGAAAATGCAAATCTTTCTCCTCTTGCTGTCCGTCCTAAAATTGACAAAGTAAAGACTTTATCTGAAATTTTGGACATAGCAGCTGCAGGGGATAATATGAGTGCTGTCTACCACTGTGCTGCAACAGTCGAGGACATTTTGGTGAAAAATGGATGGTACTATGTTTCGTGTCCTGAGTGTAGGAAAACTGTGTTTCCTACTGAAACAGATTTTCACCGTGATAATTGCAAAGTGGATGTCGCATATCCAAAGACTAGGTTCCGTTTAGAGCTTCAGGTGAAAGACCCCACCGCTTCAACCATATTTGTATTGTTTGACGATGTTGCTGAGCAGGTGGTGCAGGTTAAGCTAGCTGACCTCACCTCAAATTTAGAAAAGCACTACTTAATGGAAAATGTAAAGGACTCTGAGCTGCCTGAGCAGCTCCTTAAAATCATTGGTACCACACACGTTTTTCAGATTAGGATGGGTTCTTACTTTGAAAGTCGTGGACGACAGAGTTTCACAGCAAATAAAATTTTGAAGCCAGTTGTCAAGGTTGAAGAGGAGGATACCAAGGACGAAATATGTTCTTCCTCGAGTGAGCCTCCTACAATTAAGACACCAATTCCGGCACAAAAAAGAAGAAGATTAATCTTACATTCTTCGCCAGAATCGGGTAATATGGACCAAAAGGATATCGCGGAAGATTTACATGATTGA 1326 0.3989 MDEKHNYIHGTIPSRSASAFKDVLQEGKVYEIGIFRVSRNKRTYIIVENNTSMLQFSGSTTFTPQEYDDGKIPRYVFEFVPFEELHKRFNKEAHADVIGVIIDMTPIEERTTAYGKSDIMSLYLRNKSGDIFKVTLWGDFVSMFDKKFKQYKHAALEPNVAIFTSILVKQFQGEFLVQSSRSTTIYINIDIPEAIELAQASKAANVMDENANLSPLAVRPKIDKVKTLSEILDIAAAGDNMSAVYHCAATVEDILVKNGWYYVSCPECRKTVFPTETDFHRDNCKVDVAYPKTRFRLELQVKDPTASTIFVLFDDVAEQVVQVKLADLTSNLEKHYLMENVKDSELPEQLLKIIGTTHVFQIRMGSYFESRGRQSFTANKILKPVVKVEEEDTKDEICSSSSEPPTIKTPIPAQKRRRLILHSSPESGNMDQKDIAEDLHD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05668 441 CDD RPA1_DBD_C 228 397 IPR047192 -
Trre2g05668 441 Pfam Replication factor-A C terminal domain 246 382 IPR013955 -
Trre2g05668 441 CDD RPA1_DBD_B_like 96 202 - -
Trre2g05668 441 Gene3D - 71 209 IPR012340 -
Trre2g05668 441 Gene3D - 1 66 IPR012340 -
Trre2g05668 441 Pfam Replication protein A OB domain 88 186 IPR031657 -
Trre2g05668 441 CDD RPA1_DBD_A_like 1 62 - -
Trre2g05668 441 MobiDBLite consensus disorder prediction 392 441 - -
Trre2g05668 441 PANTHER OS03G0429900 PROTEIN 121 408 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre2g05668 441 SUPERFAMILY Nucleic acid-binding proteins 77 199 IPR012340 -
Trre2g05668 441 Gene3D - 216 398 IPR012340 -
Trre2g05668 441 SUPERFAMILY Nucleic acid-binding proteins 224 384 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05668 Trre-Chr2 62624897 62627207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05668 2 381 Core DNA Replication Machinery Family AT5G08020 24.444 4.76e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05668 - - tpra:123910350 660.988