Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05660 ATGGCAATCCATCATCATCATCATCACAATCAACTCAATCAAAACGTTTCATCTCTTTTAGATGTTCTTTACTGTGATGAAGAAAAATGGGAAGAAGAACAAGAACATGAACAAGAAGAACAAGATGATTTATCATCATCTGAACAAAGTGATGTTACAACAAACAATGACATCTTTGACTCTACTTCCCTTTTTCCTCTTCTTTTGTTACAACAAGATTTGTTCTATGAAGATGAAGAACTTAACACTCTTTTCATCAAAGAAAAAACTCATTATGAAGATCTAAAAAATGTGAAGATGAATTTTAATGATGATGATGATTCACTCTCTCAACCACGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTTCTCTCACTGCAACACTTGCTGTTACTTACTTCGATAGATTCATTTTAAGCTTCCATTTTCAAAAAGATAAACCATGGATGCTTCAACTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATACTAAGTATGTGTTTGAGGCAAAAACTATTCAGAGAATGGAGCTTTTGATTCTTTCAACATTGAAATGGAAGATGCATCCTATAACACCACACTCATTTCTAGATCACATTATAAAAAGACTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTAAGACGTTGTGAAAATCTTCTTCTAGCTGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGTTGGCAACTGCTACAATGTTGCATGTTATAGATCAGATTGAACAGAGTGATGATGGTGTGGACTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGAGAAAGTAGATGAATGTTATAATTTGATTATCCAAGTGACAAATGCAAATTCTAATGATGATTATTATTATGGTAATAATAAAAGAAAGTATGAACAAATCCCTGGTAGTCCAAGTGGTGTAATTGATGCAGTTTTTAGTTCTGATGGTTCAAACGATTCATGGACAGTGGGGTCATCAACATATTCAACAACATCAGAGCCTGTTTTTAAGAAGACCAAAACTCAAGGACAAAATGTGAATTTGTCACCTCTTAATAGGGTCATTGTCGGAATTCTTGCCACTGCAACCTCTCCTTAA 1188 0.3434 MAIHHHHHHNQLNQNVSSLLDVLYCDEEKWEEEQEHEQEEQDDLSSSEQSDVTTNNDIFDSTSLFPLLLLQQDLFYEDEELNTLFIKEKTHYEDLKNVKMNFNDDDDSLSQPRREAVEWMLKVNAHYGFSSLTATLAVTYFDRFILSFHFQKDKPWMLQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPITPHSFLDHIIKRLGLKTNLHWEFLRRCENLLLAVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDGVDYKNQLLNVLKISKEKVDECYNLIIQVTNANSNDDYYYGNNKRKYEQIPGSPSGVIDAVFSSDGSNDSWTVGSSTYSTTSEPVFKKTKTQGQNVNLSPLNRVIVGILATATSP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05660 395 SUPERFAMILY Cyclin-like 216 327 IPR036915 -
Trre2g05660 395 PANTHER CYCLINS 40 308 IPR039361 -
Trre2g05660 395 MobiDBLite consensus disorder prediction 30 52 - -
Trre2g05660 395 MobiDBLite consensus disorder prediction 30 46 - -
Trre2g05660 395 Pfam Cyclin, N-terminal domain 96 212 IPR006671 -
Trre2g05660 395 SUPERFAMILY Cyclin-like 72 213 IPR036915 -
Trre2g05660 395 SMART cyclin_7 118 206 IPR013763 -
Trre2g05660 395 FunFam CYCLIN D32 214 304 - -
Trre2g05660 395 FunFam D3-type cyclin 106 213 - -
Trre2g05660 395 Gene3D - 106 213 - -
Trre2g05660 395 CDD CYCLIN_AtCycD-like_rpt1 113 210 - -
Trre2g05660 395 Pfam Cyclin, C-terminal domain 215 328 IPR004367 -
Trre2g05660 395 ProSitePatterns Cyclins signature. 113 144 IPR006671 -
Trre2g05660 395 SMART Cyclin_C_2 215 336 IPR004367 -
Trre2g05660 395 CDD CYCLIN_AtCycD-like_rpt2 215 306 - -
Trre2g05660 395 Gene3D - 214 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05660 Trre-Chr2 62564528 62566408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05660 1 309 Core Cell Cycle Gene Families AT4G34160 56.311 4.66e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05660 K14505 - gmx:547740 509.605