Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05649 ATGGATAGAGATTATCACAGTGGCAGGGGTTTACCGCACTATCTACAGTTTGGACATGTTTGGGTTCTAACCTTATCACCCTCAGAACTTGTCTACAGTAAGAGTCAAATGAAGAACATTCAAAATGCAAATTTGGAATTATTGTATATTAGACTTGTCATGCAATATCAAGCTGCTGCTACTTCTCGCAGCTTTTGTGCGGGTGTTTCAAAGAGAGGTGATGAGAGGGTGCTTCAAGAACAACGCCGAGAAAAGTTGACGTCGAAGCTAGAGAAGATGAGTGCGGGTGCACTTCTTCAGAATGCCAAGGTGAGAACCGTTCCGGTTCAGCATCAGGGAGGAGGATGCGCATTGTGCAGGGATGATGGTTTTAAGGTGACATTTGGTCCTCAAACCCTAATGATTTGCACTCAATGCGAGAAAGAATACCACGTCGGCTGTTTGAAAAGATATTGCATAGAAGATTTAGAGGAACTGCCTAGGGGTAGTTGGTTTTGTTCAAACAACTGCCGCGACATTCATTCCGGATTGATGAATTTGGTTGCTTCCGGGGACAATAGTATTCCCGAGCATTTTCAAAAACTCATGAGAAAAAAGCAGGGTGTTGGACTCGATATTAAATGGAGACTCCTTAACCGAAAATTATTTCCATGGGATGACACTAACCCATTACTATCAAAAGCGCATGCCATCTTTGGTGAAAGGTTTCGATTAATGTTTGAGTCTGACGGTGCTGATGTTATCAGAGGAATGATCCTTGGAAAGAACTTGGAAGACCAAGATTTGAGTGGATTTTATTGTGCGGTTCTTACCGTAGGGCGATCTGTAGTTTCGGCAGCGCTGTTTCGGGTCCTTGGGTCACAGATAGCGGAGGTTCCGCTGGTGGCTACATCAATAAAACATGACGGCAAGGGATACTTTCAATGCTTATTTGGTTGCATTGAGAGGTTCCTTGCCTCTCTAGGTGTCGATTCATTTGTCCTCCATGCTTGCCAACAAGCTAAACCAATGTGGATTAGAAAATTCCGGTTTAGCAAACTCGGTAAATCAGAGATCAAGCATCTGAAGAGAAATTATAAGTTGATTTCTCTTGAAAGGACGGAATTGCTACGCAAACCGGTTGAGGAAGAAAATTAG 1137 0.4318 MDRDYHSGRGLPHYLQFGHVWVLTLSPSELVYSKSQMKNIQNANLELLYIRLVMQYQAAATSRSFCAGVSKRGDERVLQEQRREKLTSKLEKMSAGALLQNAKVRTVPVQHQGGGCALCRDDGFKVTFGPQTLMICTQCEKEYHVGCLKRYCIEDLEELPRGSWFCSNNCRDIHSGLMNLVASGDNSIPEHFQKLMRKKQGVGLDIKWRLLNRKLFPWDDTNPLLSKAHAIFGERFRLMFESDGADVIRGMILGKNLEDQDLSGFYCAVLTVGRSVVSAALFRVLGSQIAEVPLVATSIKHDGKGYFQCLFGCIERFLASLGVDSFVLHACQQAKPMWIRKFRFSKLGKSEIKHLKRNYKLISLERTELLRKPVEEEN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05649 378 SUPERFAMILY FYVE/PHD zinc finger 116 171 IPR011011 -
Trre2g05649 378 PANTHER AUTOIMMUNE REGULATOR 107 374 - -
Trre2g05649 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05649 Trre-Chr2 62469345 62475189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05649 109 375 PHD Transcription Factor Family AT2G36720 41.877 5.09e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05649 - - gmx:100803825 285.034