Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05629 ATGGCGGCTGCAATGGTGGCGGAGCCGAAAAAGGCACCACGACCGGGTAAGGGAGGCTTTGAAGGCCATGGCCTCACCGAAGAGGAAGCGCGTGTACGAGCCATTGCAGAGATTGTAAACTCCATGGTCGACCTATCTCATAAAGGCAACAAAGTTGATCTCAATGCTCTCAAGTCTGCCGCGTGCCGTAAGTACGGCCTCTCACGTGCGCCCAAACTTGTTGAGATGATTGCTGCTCTACCTGATTCCGAACGAGAGGTTCTTCTTCCCAAACTCCGAGCCAAACCTATCCGAACTGCATCTGGAATAGCCGTTGTTGCTGTCATGTCAAAGCCTCATCGTTGCCCTCACATCGCCACCACTGGTAACATTTGTGTCTACTGCCCCGGTGGTCCTGACTCTGATTTTGAATACAGTACTCAGTCTTACACGGGTTATGAACCTACCAGTATGCGTGCAATTCGAGCAAGGTATAACCCTTATGTGCAGACAAGAAGTAGGATAGATCAGCTTAAGCGTTTAGGTCACAGTGTAGACAAGGTTGAGTTTATATTAATGGGCGGAACTTTCATGTCGCTTCCGGCAGATTACCGTGATTACTTTATACGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCCAATGTAGAAGAGGCGGTGACGTACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTCGGGCCTCACTTGCGACAAATGCTTTCTTATGGCTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGTGACACTAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCCGGTTTCAAGGTAGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTCCGAGAATTTTTTGAAAGTCCTTTGTTTAGAGCAGATGGACTTAAAATATACCCCACTCTTGTTATACGTGGAACTGGACTTTATGAGCTTTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTCGACATCATAGCAAGGATCCTTTCAATGGTACCTCCGTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCGATGCCTTTGGTTACTTCTGGGGTTGAGAAAGGGAATCTACGGGAGCTAGCATTAGCTCGAATGGAAGACTTGGGATTAAAATGTCGTGATGTCCGGACCAGAGAAGCTGGAATCCAGGATATTCATCACCAAATTAAGCCAGAAGAGGTAGAGCTTGTTCGTCGTGATTATATGGCAAATGAAGGTTGGGAAACATTTCTGTCATATGAAGATACACGGCAGGATATCCTCGTTGGTTTGTTGCGACTGAGAAAATGTGGCCGAAACACTACTTGTCCAGAGCTTATGGGCAAGTGTTCTATAATTCGCGAGCTCCATGTTTATGGAACTGCTGTACCAGTTCATGGGAGGGACTCTGACAAGCTACAACACCAGGGTTATGGTACGCTTCTTATGGAGGAGGCTGAACGCATTGCTCGGAAAGAACACAGATCAACCAAGATAGCTGTAATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAGCTTGAAGGGCCTTACATGGTGAAATATCTAATGTAA 1692 0.4639 MAAAMVAEPKKAPRPGKGGFEGHGLTEEEARVRAIAEIVNSMVDLSHKGNKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPIRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIIRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIARKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLM 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05629 563 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 21 562 IPR039661 -
Trre2g05629 563 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Trre2g05629 563 SFLD elongater protein-like 52 562 - -
Trre2g05629 563 SFLD ELP3-like 52 562 IPR034687 -
Trre2g05629 563 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 49 562 IPR034687 -
Trre2g05629 563 SUPERFAMILY Radical SAM enzymes 135 374 - -
Trre2g05629 563 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Trre2g05629 563 PIRSF HAT_Elp3 21 563 IPR034687 -
Trre2g05629 563 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Trre2g05629 563 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Trre2g05629 563 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Trre2g05629 563 Gene3D - 414 563 - -
Trre2g05629 563 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 563 IPR000182 GO:0016747
Trre2g05629 563 CDD Radical_SAM 112 359 - -
Trre2g05629 563 FunFam Elongator complex protein 3 411 563 - -
Trre2g05629 563 MobiDBLite consensus disorder prediction 1 23 - -
Trre2g05629 563 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05629 Trre-Chr2 62308575 62312166 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre2g05629 Radical_SAM 1.3e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05629 K07739 - gmx:100818764 1102.43