Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05614 ATGATGATCAATGAAGATCAAACAAGTCTTACAACAATAGCCAAGGAACAACCAGGTGAAGTCATGGACAGAAATAAGAACAGCGATGATGGAAGCGGAGATGACAGTCCGAAAGAGTGGTTAAACCTGAGCTTAGGAGGTACTTCACTCTTAACAGCTGAAGAACCTGATTCACAATCAAGACCAACCAAAGTTTTTTCCTGCAACTTTTGCATGAGAAAGTTCTTTAGTTCACAAGCATTAGGAGGTCATCAGAACGCTCATAAAAGGGAAAGAGGTGCAGCCAGAAGATATCAATCTCAGAGTCAGAGGACAATGGCACTAATGGGTTTGTCCATGAACAATATGCCAATGTTCCGGTCACTTGGCGTCCAGCCCCATTCACTAGTGCACAAGCCATGCAGAGGTGGAACTATGGTTGCCCCGAGCTTTCAAGAAGCATATGCGGCAGGGATCGGAATGGCATGTACCCCTTTCACAACTGAAGATCATACTATTCCGGTGTGGCCAGGAAGCTTTCGTATGGTTCCACAACAGCCACAGCCACCACAAGAGATACTCAAGCTTGATTTAGACCTCAGACTCTGA 588 0.4541 MMINEDQTSLTTIAKEQPGEVMDRNKNSDDGSGDDSPKEWLNLSLGGTSLLTAEEPDSQSRPTKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQSQRTMALMGLSMNNMPMFRSLGVQPHSLVHKPCRGGTMVAPSFQEAYAAGIGMACTPFTTEDHTIPVWPGSFRMVPQQPQPPQEILKLDLDLRL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05614 195 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Trre2g05614 195 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Trre2g05614 195 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g05614 195 PANTHER ZINC FINGER PROTEIN 4-LIKE 2 195 - -
Trre2g05614 195 MobiDBLite consensus disorder prediction 19 36 - -
Trre2g05614 195 MobiDBLite consensus disorder prediction 1 41 - -
Trre2g05614 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Trre2g05614 195 Gene3D Classic Zinc Finger 49 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05614 Trre-Chr2 62218126 62218713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05614 64 174 C2H2 Transcription Factor Family AT1G66140 37.143 6.53e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05614 - - gmx:100306296 247.284