Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05610 ATGAATATTTCAACTGGAAATTCGGCAAACAATAACGATTGTACCACTGAGAAGATGGGAACTGAACAATGTGATTTGTCTAAAAAAACAGCTCAGATTGGCGATGAATGTTTAGACAACGAACAAAGAGTGCATGGTACTGTGTTAACCGATTCTGTTATTGATGAAAAGTCAAATGAAGTTTCTGTGAATGTGACTGACAATTCTGTTATTCAACTGCCTGAACCACCTCGTCCTTACTCAGAAAATGCTTGTCAGACTTTAGAAAGTTCACGTCTTCAAGAAAGTACCTCTGAACAGGTTTGCTTATCTGATGATAAATCAGAAATCAAATGTCCTCAAAATGTTAACAATGAAGCTGGAGAAACAAGTGATGCAGTACCTGCCCTTGTTGTTGTTGTTCAAGAGCAAACACAATCTGTTCCTGCTCAAGTGAACTCGGATTCTGTGAACGAGCCATTGGATCCACCTTCTGGAGATGTTACAGAAAATATTAAAAGCGAACCTGGTGAAATGAGTGATGCAGTAACTGGGTTTGTTGAAGACCATAAGCAATCCGTTCCTGCTCAAGTGAACACGGATTCTGTGAACGAACTACTCGATATGCCTTCTGGAGATGTTATGAAAAATATTAGTTCTAAAAACGAAGCCGTTGAAATGAGTGACGCAGTAACTGACCTTGTTGAAGACCAAACACAATCTGTTCCTGCTCAAGTGAACACAAGTGCTGCGAACAATGAGCCACTCGATACGCCTTCTGGAGATGCTGCGAAAATTAGTAGTTCTGATTGTTCAGAAAGAAAGTCCAATAACTCGCCTCAGTTGCGTGAGAAACATGCGTATAAAAAAAACTCAAAATTATCGAAGAAGTATATATTAAGGTCGTTAGGAAGCAGTGACAGAACTCTGCGGTCAAGGACAAAAGATAATAAACCTAAAGATCCTGAACCAATTAATACCGTTGATGATGTTAATAATGATGAAATGAAGACAAAAGAAAGGAAGAGGAGGGAGAAGAAAAAGACAAGAAAAGAGGGAATTAATGATCAATATTCTAGAATCAGAGCTCAATTGAGATATTATCTGAACCGAATAAGCTACGAACAAAACTTGATCGATGCTTATTCTACTGAAGGATGGAGAGGAAGCAGTATGGAAAAATTAAAACCTGAGAAGGAGATTCAACGGGCTAAGTCCGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGCGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTTTGTGCGAAATGCCATTCCAAAGCGTTGGACACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGTTATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGATGAGAATTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGAGCTTGTTAATGACTTGTTAGGGACAAGCCTCTCTCTTACCGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCACAACTTGGGACTTCCTTCTGACGATTCTGATGATGAGGACTACAATCCTGATGGTCCAGAGGACGTTCCAGAGGATGTGGAGGTTGAAGAAGGTGGATCAAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACACCAAGAGGATCAATACATGGGACTTCCTTCTGAAGATTCGGAGGATGATGATTATGATCCTGAAGCTCCCAACGTTGGTGATAAAGCAACTGAAGAAAGCTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCACTGGACAAGATGGTGATGTCACATCTGCATCGTTGGGTGATGTCAAGAATTTCAAATGTTCTAGCAAAAAAAACCATAAGAAGCCATCTATAGCTGATGAACTTTCATCTTTACAAGAGCCGGGTCTCGGTCAAGAGGATTTGACTCCTGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTATCAAAAGCTGTATGAAGAAACATACCACAGTGATACTAGTGATGATGAAGATTGGGCTGCCACTGCTACTCCAAGTAGAAAAAAGAAACTCTCTGGCAAAATGACTCCAGTATCACCGAATGGAAATGCCTCAAATAATTCCAGACATACTGCTACATGGAACACCAATCAGCATAAAGTTGAAAATACAAATAATTCACCCACCAAAACACTTGAAGGATGTACAGAATCTGGTTCCAGGGGTAAAAGACGTGGATCTTCATACAAAAAACTTGGAGAAGCTGTTGTTCAGAGACTTTACAAATCTTTCAAAGAAAATCAGTATCCAGAACGGTCCACAAAAGAAAGCTTGGCGCAAGAACTTGGAGTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTCCGGCATTCACCACGTATGCAGGCTAGTCCAGGTAGTAATGCTTCGCAGCAGGCCACTGACAGCGGAGCTGAAAATAAAGGAGAGAGAGGTAATGCTTCGCAGCAGGCCACTGACAGCGGAGCCGAAAATAAAGGAGAGAAGGAACATGAATTAGTTTCCCTGGAGACTAGTGGGGAAAAATCAAGAACCCGAAGTTCTAAGAAAAGGAAGCGTTTGTCTGAGTCACAGGCGTCTGAAGCAGGGCAGGTTCATAGCGGCCCAACCACTGATTCCTCGCCGAGAGTTGATACAGGCAATACAATGAAGAAAAAGAAAGGGAAATGA 2844 0.4135 MNISTGNSANNNDCTTEKMGTEQCDLSKKTAQIGDECLDNEQRVHGTVLTDSVIDEKSNEVSVNVTDNSVIQLPEPPRPYSENACQTLESSRLQESTSEQVCLSDDKSEIKCPQNVNNEAGETSDAVPALVVVVQEQTQSVPAQVNSDSVNEPLDPPSGDVTENIKSEPGEMSDAVTGFVEDHKQSVPAQVNTDSVNELLDMPSGDVMKNISSKNEAVEMSDAVTDLVEDQTQSVPAQVNTSAANNEPLDTPSGDAAKISSSDCSERKSNNSPQLREKHAYKKNSKLSKKYILRSLGSSDRTLRSRTKDNKPKDPEPINTVDDVNNDEMKTKERKRREKKKTRKEGINDQYSRIRAQLRYYLNRISYEQNLIDAYSTEGWRGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCHSKALDTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDENWLCPGCDCKDDCIELVNDLLGTSLSLTDTWERVFPEAATAAGSILDHNLGLPSDDSDDEDYNPDGPEDVPEDVEVEEGGSSSDESEYASASEKLEDSHQEDQYMGLPSEDSEDDDYDPEAPNVGDKATEESSSSDFTSDSEDLAATIKDNMSTGQDGDVTSASLGDVKNFKCSSKKNHKKPSIADELSSLQEPGLGQEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWAATATPSRKKKLSGKMTPVSPNGNASNNSRHTATWNTNQHKVENTNNSPTKTLEGCTESGSRGKRRGSSYKKLGEAVVQRLYKSFKENQYPERSTKESLAQELGVTFQQVDKWFGNTRWSFRHSPRMQASPGSNASQQATDSGAENKGERGNASQQATDSGAENKGEKEHELVSLETSGEKSRTRSSKKRKRLSESQASEAGQVHSGPTTDSSPRVDTGNTMKKKKGK 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05610 947 MobiDBLite consensus disorder prediction 916 936 - -
Trre2g05610 947 FunFam Homeobox protein HAT3.1 422 501 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g05610 947 CDD homeodomain 783 843 IPR001356 GO:0003677
Trre2g05610 947 MobiDBLite consensus disorder prediction 613 657 - -
Trre2g05610 947 Pfam PHD-finger 441 496 IPR019787 -
Trre2g05610 947 MobiDBLite consensus disorder prediction 840 947 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 708 792 - -
Trre2g05610 947 CDD PHD_PRHA_like 441 493 IPR045876 -
Trre2g05610 947 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 235 939 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 881 902 - -
Trre2g05610 947 SUPERFAMILY Homeodomain-like 783 846 IPR009057 -
Trre2g05610 947 Pfam Homeodomain 796 839 IPR001356 GO:0003677
Trre2g05610 947 Gene3D - 785 854 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 575 592 - -
Trre2g05610 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 490 IPR013083 -
Trre2g05610 947 MobiDBLite consensus disorder prediction 540 568 - -
Trre2g05610 947 Coils Coil 325 345 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 231 346 - -
Trre2g05610 947 SUPERFAMILY FYVE/PHD zinc finger 431 499 IPR011011 -
Trre2g05610 947 MobiDBLite consensus disorder prediction 840 880 - -
Trre2g05610 947 FunFam Homeobox protein HAT3.1 785 854 - -
Trre2g05610 947 ProSitePatterns Zinc finger PHD-type signature. 442 493 IPR019786 -
Trre2g05610 947 MobiDBLite consensus disorder prediction 736 776 - -
Trre2g05610 947 ProSiteProfiles 'Homeobox' domain profile. 783 843 IPR001356 GO:0003677
Trre2g05610 947 MobiDBLite consensus disorder prediction 532 694 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 231 269 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 803 822 - -
Trre2g05610 947 ProSiteProfiles Zinc finger PHD-type profile. 439 496 IPR019787 -
Trre2g05610 947 SMART PHD_3 441 494 IPR001965 -
Trre2g05610 947 MobiDBLite consensus disorder prediction 301 334 - -
Trre2g05610 947 SMART HOX_1 782 847 IPR001356 GO:0003677
Trre2g05610 947 MobiDBLite consensus disorder prediction 708 724 - -
Trre2g05610 947 MobiDBLite consensus disorder prediction 140 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05610 Trre-Chr2 62191685 62198935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05610 337 844 Homeobox Transcription Factor Family AT3G19510 46.239 2.70e-129 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Trre2g05610 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05610 - - cam:101500744 1296.18