Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05602 ATGACGAGCGCTTCAGAACTATTCCACATCAGAAGACACCGATTAGGACGAAATGATATCGATTCAGATTCAACTTTCCACTCTTCACCACCTACTCCCGATTTCCATCACCACCGCATTCATGATTCCGACGATGACGATTCTCTCCGTATCCGCCGCCACTACCACGTCCGCCGCCTCCGCCACCCGGAGCGTGCATCTGAAAGATTTGATGGGAGGTATCGTCGGGCGCTGTTAAATGACAGTGTTGATTCTGGTGAAAGTGTGAGAGGCGGTGAAAGGTTACCTGTAGATGTGAGACTTGCGCGAGAAAGACTCCTTCAGAGGTTGAGAGGAGGAGAGCCTCTAGATAGAAACAGGCAATACGATAGAGATTCAATGGACGAAGATCAAGAAAGTGAGTTTTCAAGTGAAATTCCATCTGTGGACTCTATAGTTGATGACTTGACTTCTCAAATGGCGAGGTTCCAGCTCTTGCACGCACCAACCCAAAAGCCACCTGGACTCACTCAGGAGGCGCTGGACTGTTTGCATGTTAAAGTTTTTAGCAGCAGTGAGACCCTATCAGAATCCAGGGTACTACAGGATTGTGGGATATGTTTGGAATCTTTTACAGACGGGGATAAACTAATCCATCTGCAATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGTCCATACTGTCGAAGATGTATAGTTGTGAATAGCGAGTCACCTTCCATAGAATGA 756 0.4696 MTSASELFHIRRHRLGRNDIDSDSTFHSSPPTPDFHHHRIHDSDDDDSLRIRRHYHVRRLRHPERASERFDGRYRRALLNDSVDSGESVRGGERLPVDVRLARERLLQRLRGGEPLDRNRQYDRDSMDEDQESEFSSEIPSVDSIVDDLTSQMARFQLLHAPTQKPPGLTQEALDCLHVKVFSSSETLSESRVLQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPYCRRCIVVNSESPSIE 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05602 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 242 IPR013083 -
Trre2g05602 251 CDD RING-H2_PA-TM-RING 196 238 - -
Trre2g05602 251 SMART ring_2 197 237 IPR001841 -
Trre2g05602 251 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Trre2g05602 251 MobiDBLite consensus disorder prediction 112 138 - -
Trre2g05602 251 MobiDBLite consensus disorder prediction 19 46 - -
Trre2g05602 251 MobiDBLite consensus disorder prediction 112 127 - -
Trre2g05602 251 Pfam Ring finger domain 196 238 IPR001841 -
Trre2g05602 251 MobiDBLite consensus disorder prediction 32 46 - -
Trre2g05602 251 SUPERFAMILY RING/U-box 180 244 - -
Trre2g05602 251 PANTHER SI:CH211-59O9.10 26 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05602 Trre-Chr2 62113200 62115577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05602 1 242 C3H Transcription Factor Family AT1G49850 44.015 3.05e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05602 - - gmx:548042 290.041