Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05592 ATGAGCTGCAACGGTTGCCGTGTGTTGAGAAAAGGATGCAGTGAGGATTGCATGCTACGAGATTGTCTAACATGGATACAAAATCCACAAGCACAGGCTAACGCCACCGTGTTCGTCACTAAATTCTTCGGCCGTGCAACCCTCTTGTCTTTCCTCTCCTCCGTTCCTCGCAACAAAAGATCCGCGTTGTTCCAGTCACTTATGTATGAAGCTGTGGGGAGGACTATAAATCCAGTGAATGGAGCTGTGGGGATGTTGTGGACTGGAAAATGGCAATTCTGTCAATTGGGTGTGGAGCAAGTGCTCAGAGGCAGCGGTGGCGCATTGACACCGCTGCCTGATTTTCATGAGAGTAGTGAAAAGGGAATTAGTTCCGGTGATCATCGACAAGAGCTAATAATGATGGACGAAAATTATTATAATGAATTAGAAGAAACACAGTCAGAGAGAGTGGTGGGAGGAAGGTGCCACCAAGCAAAATAG 483 0.47 MSCNGCRVLRKGCSEDCMLRDCLTWIQNPQAQANATVFVTKFFGRATLLSFLSSVPRNKRSALFQSLMYEAVGRTINPVNGAVGMLWTGKWQFCQLGVEQVLRGSGGALTPLPDFHESSEKGISSGDHRQELIMMDENYYNELEETQSERVVGGRCHQAK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05592 160 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Trre2g05592 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 124 - -
Trre2g05592 160 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05592 Trre-Chr2 62050985 62051617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05592 1 115 AS2 family AT3G49940 67.826 6.33e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre2g05592 LOB 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05592 - - tpra:123921551 259.225