Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05588 ATGGCTTTAGAGTTACAAGCTCTCAATTCTTCTCCAACAGGAGCTACTACTCCTTTTCCAACTTTCAAACCACAACAAGATCAAGAGATTCATGAACGTGACTCTTTTGTTAAGAAGAAAAGATCAAAACGACCGCGTATTAGTAATCCACCAACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTTGCACAAAGCGGTAACAAAAACAACAACAACAACAAAATCAACGGCTTTGATGATTTTCATCACCAAACTGAATCATCGTCTTCACAATTGCAACAACCGTCACCACCGTCACCGGTGAAGCTGAATCACAGGTGTAGTGTATGTAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCATAAAGCAAGTCACCGCAAATCCTCATCTGAAAACCAAACCACCGCCGTAATTAACGACACCGTCGCTGTGACAACCGCAACCGTTACATCCGGTAAGATGCACGAGTGTTCCATCTGTCATAAGAGTTTCCCTACCGGTCAAGCTCTTGGTGGACACAAACGATGCCACTACGACGGAGGTAATCACAATAACAACAGTAACAGTAACGTGAACGCTAATAACAACAGTGGAATCACAATCTCTGACGGCGCCGCCGCGTCTTCTTCCATCAGCCACCGTGGATTTGATCTCAATTTACCAGCGCCTCTCACTGAATTCTGGTCTCCGTTGGGATTAGGCGGTGGAGATTCGAAGAAGAATAAGGTTAACGTTAATCTGTCCGGAATCGGTGAACAAGAGGTTGAAAGTCCGTTGCCGGTAACCGCCAAAAGGCCGCGTTTGTTTTCGGGGGAAGAAGACAATGATAAAACGGCGTAG 852 0.4507 MALELQALNSSPTGATTPFPTFKPQQDQEIHERDSFVKKKRSKRPRISNPPTEEEYLALCLIMLAQSGNKNNNNNKINGFDDFHHQTESSSSQLQQPSPPSPVKLNHRCSVCNKAFPSYQALGGHKASHRKSSSENQTTAVINDTVAVTTATVTSGKMHECSICHKSFPTGQALGGHKRCHYDGGNHNNNSNSNVNANNNSGITISDGAAASSSISHRGFDLNLPAPLTEFWSPLGLGGGDSKKNKVNVNLSGIGEQEVESPLPVTAKRPRLFSGEEDNDKTA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05588 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 181 IPR013087 -
Trre2g05588 283 Pfam C2H2-type zinc finger 159 183 - -
Trre2g05588 283 Pfam C2H2-type zinc finger 107 131 - -
Trre2g05588 283 MobiDBLite consensus disorder prediction 73 104 - -
Trre2g05588 283 Gene3D Classic Zinc Finger 105 181 - -
Trre2g05588 283 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 226 IPR044653 GO:0003700
Trre2g05588 283 MobiDBLite consensus disorder prediction 254 283 - -
Trre2g05588 283 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Trre2g05588 283 MobiDBLite consensus disorder prediction 1 24 - -
Trre2g05588 283 SUPERFAMILY beta-beta-alpha zinc fingers 107 181 IPR036236 -
Trre2g05588 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Trre2g05588 283 SMART c2h2final6 159 181 IPR013087 -
Trre2g05588 283 SMART c2h2final6 107 129 IPR013087 -
Trre2g05588 283 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Trre2g05588 283 MobiDBLite consensus disorder prediction 73 103 - -
Trre2g05588 283 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05588 Trre-Chr2 62001079 62001930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05588 3 272 C2H2 Transcription Factor Family AT1G27730 40.143 7.69e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g05588 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05588 - - psat:127091014 358.607