Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05584 ATGGAAGCTGCCCAATTGATTTCTGAAGAATGGGAATCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGATTTTATGGCTCAGTTCCTTAGTGGTAATGGAAATACAAGTTTTGGCATGCCATCTTGTTTCCCTAATTCATATTTTGCAAATGATAATTTTATGTGTTTCTCCAAAGGGAGTAGCATTAGCACTAACACTGATAATAGTGCTAATACATTTTCCACCACAACAAGTAGTGATTTGGAAACAAACATTGATTCCTTGTTATTTTGTTTGGGAGATTCCAAATTAAGTCCACAATATTTTGATGATAACTTAAGCAAACAGATAAATTATGAAAGCATTGATCATGAAGGGTCAGATTTTGAACTAGTGAGACCGGTTTTTGCTGCTGACATGGATATCAGTGCAAAAAGACTTAGGAGCTCAATAGAGGTCTCAAAAAACATGAGGAATGTTAGAAAGTGTCCAAATTCTGCTTCTATGAACAACAATGAAGAGGGCCTAATGTGGCATGGGTTCAGCAACTGTTTTTCTCAGGTTGATTCAAATGCTTATGTGGAGCTAAATAGAGGAACATCTCCAAGTCTAAGCCCAAAAGAGCCTAAAGCACCTAATTTATATAAAAAATCAAAAGTAACAAGTGGTCTTGCCACTAATGCACAGAGCATTTATGCCAGAAGGAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACTAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGCTTCTGAGTTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACCTAAGCTTTAATTAA 900 0.3644 MEAAQLISEEWESLSGQYTAEEADFMAQFLSGNGNTSFGMPSCFPNSYFANDNFMCFSKGSSISTNTDNSANTFSTTTSSDLETNIDSLLFCLGDSKLSPQYFDDNLSKQINYESIDHEGSDFELVRPVFAADMDISAKRLRSSIEVSKNMRNVRKCPNSASMNNNEEGLMWHGFSNCFSQVDSNAYVELNRGTSPSLSPKEPKAPNLYKKSKVTSGLATNAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDLSFN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05584 299 SMART finulus 224 273 IPR011598 GO:0046983
Trre2g05584 299 Gene3D - 221 284 IPR036638 GO:0046983
Trre2g05584 299 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 66 290 - -
Trre2g05584 299 FunFam Basic helix-loop-helix transcription factor 219 276 - -
Trre2g05584 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 285 IPR036638 GO:0046983
Trre2g05584 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Trre2g05584 299 Pfam Helix-loop-helix DNA-binding domain 228 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05584 Trre-Chr2 61947267 61948884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05584 201 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 67.857 2.30e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g05584 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05584 - - tpra:123881860 398.667