Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05583 ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAATCTGTTTTCATGACTCAGTTCCTTAGTGGAACCTATTCATGTGATTTGGCAACAAACATTGATTCCTTGTTATTTTCTTTAGAAGATGCCAAATTTAGTCCACAATATTTGGAAGATAATTTAATTAGCAAACAGATAAATTATGAAACTTTAGAGTTTGTTCATGCTAAGAACAATTTGCAGGCTAAGAGGGAGCATGATCATGAAATGGATAGTAGTCAAAACATGGAGAACCCTTCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAAGAAACATGAGGAATGTTAGAAAGTGTCCAAATTCTGCTTCTATGAACAACAATGAAGAGGGCCTAATGTGGCATGGGTTCAGCAACTGTTTTTCTCAGGTTGATTCAAATGCTTATGTGGAGCTAAATGGAGGAACATCTCCAAGTCTAAGCCCAAAAGAACCTAAAGAATCTAATTTATGTAAAAAATCAAAAGCAACAAATGGTCCTGCCACTGATTCACAAAGCATTTATGCTAGAAGGAGAAGGGATAGAATAAATGAAAGGTTGAGAATCTTACAAACCCTTGTCCCAAATGGAACCAAGGTGGATATTAGTACAATGCTGGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTTCTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACCTAAGCTTTAATTAA 792 0.3662 MEPAQLISEEWDSLSGQYTAEESVFMTQFLSGTYSCDLATNIDSLLFSLEDAKFSPQYLEDNLISKQINYETLEFVHAKNNLQAKREHDHEMDSSQNMENPSKRFRSSIEVSRNMRNVRKCPNSASMNNNEEGLMWHGFSNCFSQVDSNAYVELNGGTSPSLSPKEPKESNLCKKSKATNGPATDSQSIYARRRRDRINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPIAYNGINIGLDLSFN 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05583 263 Gene3D - 184 249 IPR036638 GO:0046983
Trre2g05583 263 Pfam Helix-loop-helix DNA-binding domain 192 232 IPR011598 GO:0046983
Trre2g05583 263 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 254 - -
Trre2g05583 263 SMART finulus 188 237 IPR011598 GO:0046983
Trre2g05583 263 FunFam Basic helix-loop-helix transcription factor 183 240 - -
Trre2g05583 263 MobiDBLite consensus disorder prediction 86 107 - -
Trre2g05583 263 CDD bHLH_AtIND_like 183 245 - -
Trre2g05583 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 249 IPR036638 GO:0046983
Trre2g05583 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Trre2g05583 263 MobiDBLite consensus disorder prediction 155 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05583 Trre-Chr2 61942632 61944132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05583 144 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 64.655 3.05e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g05583 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05583 - - tpra:123881860 405.601