Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05583 | ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAATCTGTTTTCATGACTCAGTTCCTTAGTGGAACCTATTCATGTGATTTGGCAACAAACATTGATTCCTTGTTATTTTCTTTAGAAGATGCCAAATTTAGTCCACAATATTTGGAAGATAATTTAATTAGCAAACAGATAAATTATGAAACTTTAGAGTTTGTTCATGCTAAGAACAATTTGCAGGCTAAGAGGGAGCATGATCATGAAATGGATAGTAGTCAAAACATGGAGAACCCTTCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAAGAAACATGAGGAATGTTAGAAAGTGTCCAAATTCTGCTTCTATGAACAACAATGAAGAGGGCCTAATGTGGCATGGGTTCAGCAACTGTTTTTCTCAGGTTGATTCAAATGCTTATGTGGAGCTAAATGGAGGAACATCTCCAAGTCTAAGCCCAAAAGAACCTAAAGAATCTAATTTATGTAAAAAATCAAAAGCAACAAATGGTCCTGCCACTGATTCACAAAGCATTTATGCTAGAAGGAGAAGGGATAGAATAAATGAAAGGTTGAGAATCTTACAAACCCTTGTCCCAAATGGAACCAAGGTGGATATTAGTACAATGCTGGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTTCTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACCTAAGCTTTAATTAA | 792 | 0.3662 | MEPAQLISEEWDSLSGQYTAEESVFMTQFLSGTYSCDLATNIDSLLFSLEDAKFSPQYLEDNLISKQINYETLEFVHAKNNLQAKREHDHEMDSSQNMENPSKRFRSSIEVSRNMRNVRKCPNSASMNNNEEGLMWHGFSNCFSQVDSNAYVELNGGTSPSLSPKEPKESNLCKKSKATNGPATDSQSIYARRRRDRINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPIAYNGINIGLDLSFN | 263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05583 | 263 | Gene3D | - | 184 | 249 | IPR036638 | GO:0046983 | |
Trre2g05583 | 263 | Pfam | Helix-loop-helix DNA-binding domain | 192 | 232 | IPR011598 | GO:0046983 | |
Trre2g05583 | 263 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 93 | 254 | - | - | |
Trre2g05583 | 263 | SMART | finulus | 188 | 237 | IPR011598 | GO:0046983 | |
Trre2g05583 | 263 | FunFam | Basic helix-loop-helix transcription factor | 183 | 240 | - | - | |
Trre2g05583 | 263 | MobiDBLite | consensus disorder prediction | 86 | 107 | - | - | |
Trre2g05583 | 263 | CDD | bHLH_AtIND_like | 183 | 245 | - | - | |
Trre2g05583 | 263 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 183 | 249 | IPR036638 | GO:0046983 | |
Trre2g05583 | 263 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 182 | 231 | IPR011598 | GO:0046983 | |
Trre2g05583 | 263 | MobiDBLite | consensus disorder prediction | 155 | 187 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05583 | Trre-Chr2 | 61942632 | 61944132 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g05583 | 144 | 258 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G33880 | 64.655 | 3.05e-46 | 156 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Trre2g05583 | HLH | 6.4e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05583 | - | - | tpra:123881860 | 405.601 |