Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05582 ATGGATCATTCTGAGCAAAGTTGTGAAGAATGGAGTTCTCTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTAACAACTGCCAAATCCCTCAGCACCATTATGAAAATTTCAATTTGGAAATTCCATCTACATTATGGCCACATGACTCCACTATAGTGACCATGAATAACAGTTCACATTTTCCTCAAAATTATGATAATAATAGTAATACTGATTTTTTGAGTTTTTTACAAGAAAGTAACTCCATTTCTACTACTAGCAATATATCTCCTAGTACTATAAATTGTGGTAACATATGTTTGAATGATCAAGTAGCCAACATTGGCTACATATCTATGGAGAATTCTCATTTTAGCACTTATAGTATTCAAGGAAATGATAGCCAACAGATAACTGAAAACACCGATGAAGAGTTTGGTCAAGAGGTTTCCGAATCAACGAAAGAGGGTATTAGCAATATCCCGGAGAAGCCAGGAAAAAGATCTAGGAGCTCTATAAAGGTAGAAAAGAACAAGAGAAATGTTAAATCTAGGAAGAAACCAAAATCTGAGTTCATAAGCAACGCCGAAGAGGACGAAAGTACTGATCTTCAGGAACAAAATTTGAGTTCAGAGGATGATGACTTCAATGCTTCACAAAATTTGAAACAGAATGATTCAACAGCTCTGAAATTAAAGGGAAAAACAAAATGTGATAAAGGTTCTGCCTCTGATCCACAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCTTACAAAGCCTAGTCCCTAATGGAACCAAGGTAGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTTCAGATTAAGCTTCTGAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGACTAAACCTTGACATTAATTATCCCAACCAAACTACCATAGAGCACATAAGAAAATAG 1005 0.3592 MDHSEQSCEEWSSLSGFYTAEEADFMGQLLNNCQIPQHHYENFNLEIPSTLWPHDSTIVTMNNSSHFPQNYDNNSNTDFLSFLQESNSISTTSNISPSTINCGNICLNDQVANIGYISMENSHFSTYSIQGNDSQQITENTDEEFGQEVSESTKEGISNIPEKPGKRSRSSIKVEKNKRNVKSRKKPKSEFISNAEEDESTDLQEQNLSSEDDDFNASQNLKQNDSTALKLKGKTKCDKGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLDINYPNQTTIEHIRK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05582 334 Gene3D - 249 302 IPR036638 GO:0046983
Trre2g05582 334 MobiDBLite consensus disorder prediction 210 226 - -
Trre2g05582 334 FunFam Basic helix-loop-helix transcription factor 242 299 - -
Trre2g05582 334 SMART finulus 247 296 IPR011598 GO:0046983
Trre2g05582 334 MobiDBLite consensus disorder prediction 160 177 - -
Trre2g05582 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 307 IPR036638 GO:0046983
Trre2g05582 334 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 62 306 IPR045843 GO:0003700|GO:0006355
Trre2g05582 334 MobiDBLite consensus disorder prediction 147 226 - -
Trre2g05582 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 290 IPR011598 GO:0046983
Trre2g05582 334 CDD bHLH_AtIND_like 242 304 - -
Trre2g05582 334 Pfam Helix-loop-helix DNA-binding domain 251 291 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05582 Trre-Chr2 61937750 61939168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05582 10 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 37.845 4.55e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g05582 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05582 - - tpra:123881885 592.038