Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05566 ATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCATGTGAGAAAACGGTTTATCTTGTTGATAAGCTAACTGCAGATGGTCGTATTTATCATAAGGCCTGCTTTCGATGCCACCATTGCCGGAATACCCTTAAGCTAAGCAACTACTGTTCTATTGAGGGGATGCTCTATTGCAGACCACACTATGATCAACTCTTCAAGAGAACTGGCAGCCTGGACAAAAGTTTCCAAGGAACACCCAAAACTCAGAAACCAGAAAGACAGACCACCGAGAATGAGAATGCCAAAACCATGGCAAACATGTTCTTGGGCACCACAGACAAATGCATGTGTTGCAAAAAGACTGTGTATCTCACTGAGAGGGTTACGGTTAATGGGACACCCTATCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAACTCAGCAAACTTTGTTACACATGAAACAAAGCTCTACTGCAAACATCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTTGAGAATGAAATTACTGTTTAA 546 0.4212 MASFGGTTQKCMACEKTVYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSIEGMLYCRPHYDQLFKRTGSLDKSFQGTPKTQKPERQTTENENAKTMANMFLGTTDKCMCCKKTVYLTERVTVNGTPYHKGCFKCTYGGCTINSANFVTHETKLYCKHHHIQLFKEKGNYSQLENEITV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05566 181 Pfam LIM domain 11 65 IPR001781 -
Trre2g05566 181 Pfam LIM domain 110 165 IPR001781 -
Trre2g05566 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 135 - -
Trre2g05566 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Trre2g05566 181 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Trre2g05566 181 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Trre2g05566 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Trre2g05566 181 FunFam LIM domain and actin-binding 1 5 75 - -
Trre2g05566 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Trre2g05566 181 FunFam LIM domain and actin-binding 1 104 174 - -
Trre2g05566 181 SMART lim_4 10 62 IPR001781 -
Trre2g05566 181 SMART lim_4 109 161 IPR001781 -
Trre2g05566 181 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Trre2g05566 181 PANTHER OS06G0237300 PROTEIN 105 176 - -
Trre2g05566 181 Gene3D Cysteine Rich Protein 105 174 - -
Trre2g05566 181 Gene3D Cysteine Rich Protein 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05566 Trre-Chr2 61841024 61842262 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Trre2g05566 LIM 2.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05566 K09377 - gmx:100306027 343.199