Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05562 ATGGGTGTTGATGCTGGTAAGAAGCGACTAACCAAGAAAGATGCATTAACGTTTCTTAAGGCCGTAAAAGTTGCATTTCAAGATGAGAGGGAAAAGTATGATGAATTTATAGAAATTTTGAAGGATTTTAAGGCTGGAAGAACCAATACAATTGGTGTAACTTCACGAGCGAGGGAGCTATTTAAAGAGCATATACATTTAATTTTGGGATTCAACAACTTCCTGCCAAATGGATATCAATTTATTCAACTTATTTCACCAAAAAGGAGAATCAATTTCAGCAGCAACTAG 291 0.354 MGVDAGKKRLTKKDALTFLKAVKVAFQDEREKYDEFIEILKDFKAGRTNTIGVTSRARELFKEHIHLILGFNNFLPNGYQFIQLISPKRRINFSSN 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05562 96 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Trre2g05562 96 ProSiteProfiles PAH domain profile. 8 78 IPR003822 GO:0006355
Trre2g05562 96 PANTHER SIN3B-RELATED 9 81 IPR039774 GO:0003714
Trre2g05562 96 FunFam Paired amphipathic helix protein Sin3 14 76 - -
Trre2g05562 96 Pfam Paired amphipathic helix repeat 31 75 IPR003822 GO:0006355
Trre2g05562 96 SUPERFAMILY PAH2 domain 8 77 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05562 Trre-Chr2 61823755 61826103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05562 10 93 WRKY Transcription Factor Family AT4G12020 46.429 1.03e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g05562 PAH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05562 K11644 - tpra:123882166 125.561