Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05539 ATGGACATGGTACAGCAAAGAAAGAAAACCACCGGGCGGAAGAAGATCGAGATCAAGAAACTTGATAAAGAATCCAACAAACAGGTCACGTTCTCGAAAAGAAGACAAGGATTATTCAAAAAAGCGAGTGAACTTTGTATTTTATGTAATGTTCGTGCGGCTATCATTGTTTTTTCTCCGGCCGATAAACTATATAGTTTTGGTCAACCAAACACCGATGTAATCCTCACTAGCTACATCAATGGAACAACTGACTTCGAGGATGCGAAGTCAACGGAAGATTCTTCGATCTATGCTGAGTACAATGAACAATATGAGGAGGCACTAAAGGTGTTGGAGATGGAAAAGAAGAAACTGGCTGATGTTGAAAATTTGGCTAAGACTTGGAATAGAGGTGATTGGTGGAATGATTCAATCGATGATATGAGCATTGATCAGCTTGAACAATTTATGATCTCCCTTTATGAGTTAAGGAAGAAGCTTTTTGAAAGGGCTGATGATCTTTTGATGAATAATTTAATGTTTCAATAG 531 0.3804 MDMVQQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCILCNVRAAIIVFSPADKLYSFGQPNTDVILTSYINGTTDFEDAKSTEDSSIYAEYNEQYEEALKVLEMEKKKLADVENLAKTWNRGDWWNDSIDDMSIDQLEQFMISLYELRKKLFERADDLLMNNLMFQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05539 176 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Trre2g05539 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Trre2g05539 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Trre2g05539 176 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Trre2g05539 176 Coils Coil 98 125 - -
Trre2g05539 176 PANTHER MADS BOX PROTEIN 13 163 - -
Trre2g05539 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Trre2g05539 176 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Trre2g05539 176 Gene3D - 23 106 IPR036879 GO:0003677|GO:0046983
Trre2g05539 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Trre2g05539 176 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05539 Trre-Chr2 61660362 61660892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05539 8 173 Type I MADS-box Gene Family AT5G60440 41.618 1.05e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g05539 SRF-TF 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05539 - - cam:101502875 255.758