Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05536 ATGCCTCTATTTCTCTTTCTTTGTTTTTTGTTTTCTACAATTGTATCTCAAGCCAAAGCAGGTGATCCTGTATCCTGTGATAACAATAGAGGAAACTACACAACCAATAGCATCTATGACAACAATCTTAAAACTGTTTTATCCAGTTTCTCTTCCCATACACAAATTAACTATGGTTTCTACAATTTCTCATATGGTCAAGACCCCGACAAAGCATACGCCATTGGGCTATGTCGCGGAGATCTTAGCCCGAATCAATGTCTTACAAACATAAACAATTCGTTTGTTTATCTCAGACAGCAGTGTCCAAATCAAAAAGAAGCAATTGTCTGGGGTGGTGATTTCACTTTATGGTACTCAAATCGATCGATTTTTGGGACTGTGGAAACTAGTCCTACACGATATTTGGTTTTAGTAAGGGATGCAAGTGATGCAGATATGTATAAGCAATCATTGAGTAACTTGATGAAAAATTTAACAGAAAAAGCTGCATCAGGTGATTCTCGTCGTAAATATGATGCTGATAGTGTTAGTGATCCTGCAAATTTCGCAACCATATATGGTTATGTGCTTTGTATGCCGGATTTGTCATCGCAACAATGCACTGATTGCTTGGTTCAGACAATTTCCGAAATCCCAAATTGTTGTAATGGGAAGATGGGAGGAAATATTCTTAAACCAAGTTGTCGTATTAGATTTGATCCTTATCGCTTCTTCAATTCGACAATTGTGTTAGATTCAAATGCAACTCCTCCTGAACCACCGTCACTACCACCTTCATCATCCGCCACTAATAGCACTTCTTCAGGACACAATAAAACCCGAACTGTCATCGCTACTGCAGTACCAGTTGCTACTGTGGTTTTGTTCCTCTTTTTTATATGCATCTATTTAAGATTCAGAAAGCTAAAACAAATGTTTGAAGCTGATAATGGAGAATATGTTGATAGAGATGGAGATGAAGATGAAATTACAATTGTTGAGTCATTTCAATTTAACTTTGATACCATTCGAGTTGCTACAAATGACTTCTCTGATTCTAATAAACTTGGGCAAGGTGGATTTGGAGTTGTTTATCGAGGTAAACTACCTGATGGACAAATGATTGCTGTCAAAAGATTGTTAAAAGATTCCAGCCAAGGAGATGTGGAATTTAAAAATGAAGTACTATTAGTAGCAAAGCTTCAACATCGAAATTTAGTTAGACTACTCGGTTTCAGTTTAGAAGGGACGGAAAGGCTGCTTATCTATGAATTTGTTACAAATAAAAGTCTCGATTACTTCATATTTGATCCAATCAGGAAAGCACAATTGAATTGGGGAAAGCGCTACGATATTATAAGAGGCATTGCTCGAGGTCTTCTTTATCTTCATGAGGATTCCCGCCTACGAATTATACACCGTGATATCAAAGCAAGCAATATTCTCTTAGACAACGATATGAATCCTAAGATAGCCGATTTTGGATTGGCAAGATTGTTTATTATAGATCAAACCGAAGGAAATACAAATAGAATTGTTGGAACTTATGGATATATGGCCCCTGAGTATGCAATGCATGGACAATTTTCGGTAAAATCGGATGTCTTTAGTTTTGGAGTATTGGTTCTTGAGATTATAAGTGGTCATAAAAATAGCACAAACATTGGTCATGGAAATGATATAGAGTATCTATTGAGCTATGCATGGAGAAGTTGGAGAGAGGGGCAAGCTACAAATATTATAGATCCATCATTAAACAACATTTCAGCAAATGAAATAATGAGATGCATCCATATTGGTTTACTGTGTATTCAAGAAAATGTAGTTGACAGACCAACCATGGCTTCTGTTGCACTCATGCTTAATAGTAATTCTCTCACTCTCTCAATACCTTCAAAACCTGCATATTTTTATGGAAGTGGAACTAGAAGCTTACAAGACATGCAGTTATGGGATGGACATATAGATTCAACAACTTCAGATGAATCAAAGAACACGGCTTCAAATACTGATCCATACCCTCGCTAG 2010 0.3677 MPLFLFLCFLFSTIVSQAKAGDPVSCDNNRGNYTTNSIYDNNLKTVLSSFSSHTQINYGFYNFSYGQDPDKAYAIGLCRGDLSPNQCLTNINNSFVYLRQQCPNQKEAIVWGGDFTLWYSNRSIFGTVETSPTRYLVLVRDASDADMYKQSLSNLMKNLTEKAASGDSRRKYDADSVSDPANFATIYGYVLCMPDLSSQQCTDCLVQTISEIPNCCNGKMGGNILKPSCRIRFDPYRFFNSTIVLDSNATPPEPPSLPPSSSATNSTSSGHNKTRTVIATAVPVATVVLFLFFICIYLRFRKLKQMFEADNGEYVDRDGDEDEITIVESFQFNFDTIRVATNDFSDSNKLGQGGFGVVYRGKLPDGQMIAVKRLLKDSSQGDVEFKNEVLLVAKLQHRNLVRLLGFSLEGTERLLIYEFVTNKSLDYFIFDPIRKAQLNWGKRYDIIRGIARGLLYLHEDSRLRIIHRDIKASNILLDNDMNPKIADFGLARLFIIDQTEGNTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIISGHKNSTNIGHGNDIEYLLSYAWRSWREGQATNIIDPSLNNISANEIMRCIHIGLLCIQENVVDRPTMASVALMLNSNSLTLSIPSKPAYFYGSGTRSLQDMQLWDGHIDSTTSDESKNTASNTDPYPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05536 669 FunFam Cysteine-rich receptor-like protein kinase 10 308 419 - -
Trre2g05536 669 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Trre2g05536 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 662 - -
Trre2g05536 669 Gene3D Transferase(Phosphotransferase) domain 1 420 623 - -
Trre2g05536 669 ProSiteProfiles Protein kinase domain profile. 344 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05536 669 CDD STKc_IRAK 350 616 - -
Trre2g05536 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Trre2g05536 669 FunFam Cysteine-rich receptor-like protein kinase 10 133 238 - -
Trre2g05536 669 MobiDBLite consensus disorder prediction 249 270 - -
Trre2g05536 669 Gene3D - 23 123 IPR038408 -
Trre2g05536 669 Gene3D - 136 238 IPR038408 -
Trre2g05536 669 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Trre2g05536 669 Pfam Salt stress response/antifungal 144 234 IPR002902 -
Trre2g05536 669 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Trre2g05536 669 Pfam Protein kinase domain 345 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05536 669 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Trre2g05536 669 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 22 124 - -
Trre2g05536 669 FunFam cysteine-rich receptor-like protein kinase 10 420 622 - -
Trre2g05536 669 ProSiteProfiles Gnk2-homologous domain profile. 130 238 IPR002902 -
Trre2g05536 669 MobiDBLite consensus disorder prediction 649 669 - -
Trre2g05536 669 SMART serkin_6 344 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05536 669 SUPERFAMILY Protein kinase-like (PK-like) 329 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05536 Trre-Chr2 61645381 61648327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05536 3 630 Receptor kinase-like Gene Family AT4G21410 48.906 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05536 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05536 - - mtr:11442310 915.99