Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05534 ATGGCAATAGTGTCTTGCAAGTCATCGTTTTCGTTTTTTTATATTCTCCTCATTATTATTGTATCTCAAACAAAAGCCCAGCCAGAGTTTAGGGGCAACTTTTGTATAAACGATAATGGCAACTACACAGCCAATAGCACATATCAAACCAACCTTAACATCCTTTTGTCCAATCTCTCTTCCAACACAGAAATCAACTACGGTTTCTACAATTTTTCTTATGGCCAAAACACCGACAAAGTAAATGCCATTGGACTCTGTAGAGGAGATGTTAAACCTGATGATTGCCGCAATTGTCTAAACGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACAACTGCATGTTGCGCTATTCAAACCGATCAATATTTGGCATTATGGAAGGTTCGCCTACATACTATTTGTGGAATCCAAACAATGCAACAGATGTGGATCAATTTAATCAAGTTCTTGGGATCTTGATGAAGAAACTGAGAGAAAGAGCTGCATCAAGTGATGATTTTCGTGTTAAGTATGCTACGGGTAATGAAACTGATGTGAACTTGAATTTTCAAACCGTATATGGTCTTGTGCAGTGTACACCTGATTTGTCATTGCAAGATTGCAATAGTTGTTTAGATGCTGCTATCTCGGAAATTCCAAGTTGTTGTAATAACAAAGGTGGTGGTAGAGTTTTGAAACCAAGTTGTAATATTAGATTTGAATCATCTCTCTTCTACAATCCTACGCCTGTAGTAGACACAGATGAAACCTCGCCACCACAAGAAAAAAGCAAATCATCTCATACTACTACCATTGCCATAGTTGTGCTTACTGTTGTTGTAGTTCTTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCATAAAATACAAGATGATGATAATGATGATGATGATGATGATATTGAAATCGCCGAGTCATTGCAATTCAACTTTGACACAATAGGAGTTGCTACAAATAACTTTTCCGAAGCTAATAAACTCGGGCGTGGCGGATTTGGAGTTGTTTATCAGGGTAAACTCTCGAGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAAAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAAGAAAAGAAAGGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTTATATTTGATCCAATAAAGAAAGTACAATTAGATTGGGAAAGGCGCTATAAAATTATTGGAGGTATTGCCAGAGGCCTTCTTTACCTTCACGAGGATTCTCGACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGACGAAGATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGGCTATTGCTTGTTGATCAAACTCAAGTAAATACAGATAAAATCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGACAATTTACGGTAAAGTCAGATGTTTTTAGTTTTGGCGTACTAGTTCTAGAGATTATAAGTGGCCACAAAATTAATCGCATTCTTCATGGACAGAGTCAGGAGGATTTACTTTGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCAGAAATATAATAGATCCATCATTAAACAACGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGGTTGATAGACCAACTATGGCAACCATTGCACTCATGCTTAGCAGTTATTCTCTCAGTATGCCTTTACCTTTGGAGCCTGCATATGCTATGGGCGGGAGAACTAGAAGCTTTACATACACGCAATCATCTGAGGAAGATAAAGGAACAACAAGTTCATTTGAATCTAAAAGTAAATCAGTAAATGATAATACAATGTCTTAA 1983 0.3661 MAIVSCKSSFSFFYILLIIIVSQTKAQPEFRGNFCINDNGNYTANSTYQTNLNILLSNLSSNTEINYGFYNFSYGQNTDKVNAIGLCRGDVKPDDCRNCLNDSRVLLTRLCPNQKEAIGWYDNCMLRYSNRSIFGIMEGSPTYYLWNPNNATDVDQFNQVLGILMKKLRERAASSDDFRVKYATGNETDVNLNFQTVYGLVQCTPDLSLQDCNSCLDAAISEIPSCCNNKGGGRVLKPSCNIRFESSLFYNPTPVVDTDETSPPQEKSKSSHTTTIAIVVLTVVVVLVLLTLIICICLRRNRHKIQDDDNDDDDDDIEIAESLQFNFDTIGVATNNFSEANKLGRGGFGVVYQGKLSSGQVIAVKRLSRDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLERKERLLVYEFVPNKSLDYFIFDPIKKVQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEDMNAKISDFGMARLLLVDQTQVNTDKIVGTYGYMAPEYAMFGQFTVKSDVFSFGVLVLEIISGHKINRILHGQSQEDLLCFAWRNWREGTIRNIIDPSLNNGSQNEIMRCIHIGLLCVQENLVDRPTMATIALMLSSYSLSMPLPLEPAYAMGGRTRSFTYTQSSEEDKGTTSSFESKSKSVNDNTMS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05534 660 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre2g05534 660 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Trre2g05534 660 Gene3D - 140 249 IPR038408 -
Trre2g05534 660 Gene3D - 30 132 IPR038408 -
Trre2g05534 660 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Trre2g05534 660 FunFam Cysteine-rich receptor-like protein kinase 10 141 249 - -
Trre2g05534 660 Pfam Salt stress response/antifungal 150 246 IPR002902 -
Trre2g05534 660 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Trre2g05534 660 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 658 - -
Trre2g05534 660 Gene3D Phosphorylase Kinase; domain 1 301 412 - -
Trre2g05534 660 CDD STKc_IRAK 343 607 - -
Trre2g05534 660 FunFam cysteine-rich receptor-like protein kinase 10 413 614 - -
Trre2g05534 660 MobiDBLite consensus disorder prediction 633 660 - -
Trre2g05534 660 Pfam Protein tyrosine and serine/threonine kinase 340 603 IPR001245 GO:0004672|GO:0006468
Trre2g05534 660 ProSiteProfiles Gnk2-homologous domain profile. 139 249 IPR002902 -
Trre2g05534 660 Gene3D Transferase(Phosphotransferase) domain 1 413 614 - -
Trre2g05534 660 SMART serkin_6 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05534 660 SUPERFAMILY Protein kinase-like (PK-like) 325 641 IPR011009 -
Trre2g05534 660 ProSiteProfiles Protein kinase domain profile. 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05534 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre2g05534 660 FunFam Cysteine-rich receptor-like protein kinase 10 299 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05534 Trre-Chr2 61639994 61642897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05534 12 660 Receptor kinase-like Gene Family AT4G21410 49.560 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05534 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05534 - - gmx:100791056 816.224