Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05532 ATGGCAATTATGATTGTGTCTTTCAAGTTATCATTTTCCTTTTTCTATTTTCTCCTTCTTCTCATCATTAGCATTGTATCTCAAGCTAAAGCCCAGCCAAATTTTTTGTACAACTTTTGTATAAACAAAAATGGAAACTACACAGCCAATAGCACATATCAAAACAACCTCAACATCCTTTTGTCCAATCTCTCTTCCAACAAAGAAATCGACTACGGTTTCTACAATTTCTCTTATGGCCAAAACACTGACAAAGTAAACGCTATTGGACTTTGCAGAGGAGATGTTAAACCTGATATTTGCCGTAATTGTCTCAACGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACAACTGCATGTTGCGCTACTCTAACCGATCAATATTTGGCATTATGGAAGGTTTACCTTCGTTTTATATGTCAAATAGTAAAAATGTAACACAGGTGGATCAATTTAATCAAGTTCTTGGGGATTTGATGAAGAAACTGAAAGAAAAAGCTGCATCGAGTAATGACTCTCGCGTTAAGTATTCTACGGGTAATGAAACTGATGTGAACTTGAATTTTCAAACCGTATATGGTCTTGTGCAGTGTACACCTGATTTATCATTTCAAGATTGCACGCGTTGTTTAGATGATGCTATCTATGAAATTCCAACTTGTTGTAATAACAAGATGGGTGGTAGAGTTATTAAACCAAGTTGTAGTTTTAGATTTGAATCAGCTCTCTTCTACGATGCGCCTGTAGTAGACACAGACGACCTTACGCCTGTAGTAGATACAGATGGAACCTCTCCACCACAAGAAAAAAGCAAATCATCTCATACTACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTAGTTCTTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCGGCGCCATAGTATGGCAGGGTCAAATCGCGAAGAAATAGAAGATGATGATGATATTGAAATTGCCGAGTCATTGCAATTCAACTTCGACACAATAGGAGTTGCTACAAATAACTTTTCCGAAGCTAATAAACTCGGACATGGCGGATTTGGAGTTGTGTATCGGGGTAAACTCTCGAGTGGACAAATGATTGCGGTCAAAAGATTGTCGGTAGATTCTGGACAAGGAGATATTGAATTTAAGAATGAAGTGCTTTTATTAGCTAAACTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAGGAAAAGAAAGACTACTTGTGTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTTATATTTGATCCAATAAAGAAAGGACAATTAGATTGGGCAATGCGCTACAAAATTATTGGAGGTATTGCTAGAGGACTTCTTTACCTGCATGAGGATTCTCGCCTTCGTATTATACATCGTGATCTTAAATCAGGTAACATTCTCTTGGACGAAGATATGAATGCAAAAATATCAGATTTTGGGATGGCCAGACTGCTTCTTGTTGATCAAACTCAAGTAAATACAAATAAAGTCGTTGGAACATAG 1560 0.3673 MAIMIVSFKLSFSFFYFLLLLIISIVSQAKAQPNFLYNFCINKNGNYTANSTYQNNLNILLSNLSSNKEIDYGFYNFSYGQNTDKVNAIGLCRGDVKPDICRNCLNDSRVLLTRLCPNQKEAIGWYDNCMLRYSNRSIFGIMEGLPSFYMSNSKNVTQVDQFNQVLGDLMKKLKEKAASSNDSRVKYSTGNETDVNLNFQTVYGLVQCTPDLSFQDCTRCLDDAIYEIPTCCNNKMGGRVIKPSCSFRFESALFYDAPVVDTDDLTPVVDTDGTSPPQEKSKSSHTTTIAIVVPTVVVVLVLLTLIICICLRRNRRRHSMAGSNREEIEDDDDIEIAESLQFNFDTIGVATNNFSEANKLGHGGFGVVYRGKLSSGQMIAVKRLSVDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLEGKERLLVYEFVPNKSLDYFIFDPIKKGQLDWAMRYKIIGGIARGLLYLHEDSRLRIIHRDLKSGNILLDEDMNAKISDFGMARLLLVDQTQVNTNKVVGT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05532 519 Pfam Protein kinase domain 355 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05532 519 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 519 - -
Trre2g05532 519 Gene3D - 32 137 IPR038408 -
Trre2g05532 519 Gene3D - 146 254 IPR038408 -
Trre2g05532 519 FunFam Cysteine-rich receptor-like protein kinase 10 146 254 - -
Trre2g05532 519 Gene3D Phosphorylase Kinase; domain 1 316 429 - -
Trre2g05532 519 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Trre2g05532 519 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 430 519 - -
Trre2g05532 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Trre2g05532 519 SMART serkin_6 354 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05532 519 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre2g05532 519 ProSiteProfiles Protein kinase domain profile. 354 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05532 519 Gene3D Transferase(Phosphotransferase) domain 1 430 519 - -
Trre2g05532 519 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre2g05532 519 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre2g05532 519 FunFam Cysteine-rich receptor-like protein kinase 10 314 429 - -
Trre2g05532 519 Pfam Salt stress response/antifungal 154 251 IPR002902 -
Trre2g05532 519 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre2g05532 519 SUPERFAMILY Protein kinase-like (PK-like) 339 519 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05532 Trre-Chr2 61621689 61623997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05532 4 519 Receptor kinase-like Gene Family AT4G05200 49.810 5.57e-162 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05532 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05532 - - gmx:113000773 599.356