Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05530 ATGGCAATTATGATTGTGTCTTTCAAGTTATCATTTTCCTTTTTCTATTTTCTCCTTCTTCTTATCATTAGCATTGTATCTCAAGCTAAAGCCCAGCCAATTTTTTTGCACAACTTTTGTATAAACGATAATGGCAACTACACAGCCAATAGTACATATCAAAACAATCTTAACATCCTTTTGTCCAATCTCTCTACCAACACAGAAATCGACTACGGTTTCTACAATTTCTCTTATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCCGATGTTTGCCGCAGCTGTCTCAACGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATGGGTTGGTATGACTATTGCATGCTGCGCTACTCCAACCAATCAATATTTGGCATTATGGATGGTTCACGTACATACTATAAGTGTAACGGTCACAATGTAACTCAGGTGGATCAATTTAATCAAGTTCTTGGAAACTTGATGAAGAAACTGAAAGAAAAAGCTGCATCAAGTAATGACTCTCGTGTTAAGTATGCCACGGGTAATGAAACTGATGTGAACTTGAATTTTCAAACCGTATATGGTCTTGTGCAGTGTACACCTGATTTATCATTTCAAGATTGCAATCGTTGTTTAGATGCAGCTATCTCGGAAATTCCAAGTTATTGTAATAACAAGATTGGTGGTAGAGTTATTAAAGCAAGTTGTAATATTAGATATGAATCCTATCTCTTCTACGATCCTCCACTTGTAGTAGACACAGATGAAGCCTCTCCACCACAAGTTGCAGAAAAAAGCAAATCATCGCATACTAGTACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTAGTTCTTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCGGCGCCATAGTATTGCAGGGTCAAATCTCAAAGAAATAGAAGATGATGATGATATTGAAATTGCTGAGTCATTGCAATTCAACTTTGGCACAATAGGAGTTGCTACAAATAACTTTTCCGATGCTAATAAACTCGGACATGGCGGATTTGGAGTCGTTTATCATGGTAAACTCTCGAGTGGACAAATGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAAATATTGAATTTAAGAATGAAGTGCTGTTATTGGCTAAACTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTTGAAGGAAATGAAAGGCTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTTATATTCGATCCAATAAAGAAAACACAATTAGATTGGGAAATGCGGTACAAAATCATTGGAGGTATTGCTAGAGGGCTTCTTTACCTGCACGAAGATTCTCGACTTCGTATTATACATCGTGATCTTAAATCAGGAAACATTCTCTTGGATGAAAATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGACTGCTACTTGTTGATCAAACTCAAGTAAATACAGATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTATGGACAATTTTCGGTAAAATCAGATGTCTTTAGTTTTGGCATACTAGTTCTAGAGATTATAAGTGGCCAAAAAATTAGTTGCATTCTTCAAGGGCAAAGTCAGGAAGATTTACTTATCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATAGATCCATCATTAATCAATGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGCTTGATAGACCAACTATGGCAACCATTGCACTCATGCTTAGCAGTTATTCTCTCAGTATGCCTTTACCTTTGGAGCCTGCATATGCTATGGGCGGGAGAACTAGAAGCCTTTCATACACGCAATCATCTGGGGAAGATATAGGGACAACAGGTTCAATTGAATCCAAAAGTAAATCAGTAAATGAGAGTTAA 2010 0.3687 MAIMIVSFKLSFSFFYFLLLLIISIVSQAKAQPIFLHNFCINDNGNYTANSTYQNNLNILLSNLSTNTEIDYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRSCLNDSRVLLTRLCPNQKEAMGWYDYCMLRYSNQSIFGIMDGSRTYYKCNGHNVTQVDQFNQVLGNLMKKLKEKAASSNDSRVKYATGNETDVNLNFQTVYGLVQCTPDLSFQDCNRCLDAAISEIPSYCNNKIGGRVIKASCNIRYESYLFYDPPLVVDTDEASPPQVAEKSKSSHTSTTIAIVVPTVVVVLVLLTLIICICLRRNRRRHSIAGSNLKEIEDDDDIEIAESLQFNFGTIGVATNNFSDANKLGHGGFGVVYHGKLSSGQMIAVKRLSRDSGQGNIEFKNEVLLLAKLQHRNLVKLLGFCLEGNERLLIYEFVPNKSLDYFIFDPIKKTQLDWEMRYKIIGGIARGLLYLHEDSRLRIIHRDLKSGNILLDENMNAKISDFGMARLLLVDQTQVNTDKVVGTYGYMAPEYAMYGQFSVKSDVFSFGILVLEIISGQKISCILQGQSQEDLLIFAWRNWREGTITNIIDPSLINGSQNEIMRCIHIGLLCVQENLLDRPTMATIALMLSSYSLSMPLPLEPAYAMGGRTRSLSYTQSSGEDIGTTGSIESKSKSVNES 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05530 669 MobiDBLite consensus disorder prediction 645 669 - -
Trre2g05530 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre2g05530 669 Pfam Salt stress response/antifungal 151 252 IPR002902 -
Trre2g05530 669 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Trre2g05530 669 FunFam Cysteine-rich receptor-like protein kinase 10 309 424 - -
Trre2g05530 669 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre2g05530 669 Gene3D Phosphorylase Kinase; domain 1 314 424 - -
Trre2g05530 669 ProSiteProfiles Protein kinase domain profile. 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05530 669 SMART serkin_6 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05530 669 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre2g05530 669 FunFam cysteine-rich receptor-like protein kinase 10 425 626 - -
Trre2g05530 669 FunFam Cysteine-rich receptor-like protein kinase 10 146 254 - -
Trre2g05530 669 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre2g05530 669 CDD STKc_IRAK 355 619 - -
Trre2g05530 669 Pfam Protein tyrosine and serine/threonine kinase 353 615 IPR001245 GO:0004672|GO:0006468
Trre2g05530 669 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre2g05530 669 SUPERFAMILY Protein kinase-like (PK-like) 335 619 IPR011009 -
Trre2g05530 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 51 644 - -
Trre2g05530 669 Gene3D - 144 254 IPR038408 -
Trre2g05530 669 Gene3D - 34 137 IPR038408 -
Trre2g05530 669 Gene3D Transferase(Phosphotransferase) domain 1 425 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05530 Trre-Chr2 61596110 61599117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05530 9 636 Receptor kinase-like Gene Family AT4G21410 49.387 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05530 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05530 - - gmx:100782800 785.023