Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05529 ATGTCAATTGTTTCTTTCAAGTTATCATTTCCCTTTTTTTTTCTTTTTCTCCTTCTTCTCATTATTAGTATTGTATCTCAAGCAAAAGACCAGCCAAATTTTTTGTACAACTTTTGTATAAACGATAATGGCAACTACACAGCCAATAGTACGTATCAAAACAACCTTAACATCCTTTTATCCAATCTCTCTACCAACACTGAAATCGACTATGGTTTCTACAATTTCTCTTATGGCCAAAACAATGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCTGATGTTTGCCGCAATTGTCTCAATGATTCAAGAGTTCTTCTTACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTGGGTATGAAAACTGCATGCTGCGCTATTCAAACCGATCAATATTTGGCATTATGGAAGGTTCACCTACATTTTATATGTGGAACACAAACAGTGTAACCGAGGTGGATCAATTTAATCGAGTTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCTGCATCAAGTGACGACTCTCGTTTTAAGTATGCTACGGGTAATGCAACTGATGTGAATTTGATTTTTCAAACCATATATGGTCTAGTGCAGTGTACACCTGATTTATCATTACAAGATTGCAATCGTTGTTTAGATGCGGCTATCTCAGAAATTCCAAGTTGTTGTAATAACAAGATTGGTGCTAGAGTTGTTAAACCAAGTTGTATTATTAGATATGAATCCTTTCTCTTCTACGATCCTCCACCTGTAGTAGACCCAGATGAACCCTCTCCACCACAAGAAAAAAGCAAATCATGGCATACTACCATTGCCATAGTTGTGCTGACTGTTGTTCTAGTTGTTGCTCTGTTAAGTTTCATTTGCATCTGCTTAATGAGAAATCGCCGCAAGGAATGGTTAAATCTTGAAGAAATAGAAGATGATGATAATGATTATATTGAAATTGCCGAGTCATTGCAATTCAACTTTGACACAATACGAGTTGCTACAAGTAACTTTTCCGAAGCTAATAAACTCGGACATGGCGGATTTGGAGTTGTTTATCGGGGTAAACTCTCCGGTGGACAAGTGATTGCGGTAAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAGAATGAAGTGCTTTTGCTAGTTAAACTTCAACATCGAAATTTAGTTAGATTACTTGGTTTTTGTCTAGAAGGAAGAGAAAGACTGCTTGTGTATGAATTTGTTCATAATAAAAGCCTTGATTACTTTATATTTGATCCAATAAAGAAAGCAGAACTAGATTGGGAAAGGCGCTACAAAATCATTGAGGGTATTGTGAGAGGACTTCTTTACCTTCATGAGGATTCTCAACTTCGTATTGTACATCGTGATCTTAAAGCAAGTAACATTCTTTTGGACGAGAATATGAATGCTAAAATATCAGATTTTGGTATGGCCAGATTACTTGTTGATCAAACTCAAGTAAATACAGATAAAGTCGTTGGAACATAG 1521 0.3609 MSIVSFKLSFPFFFLFLLLLIISIVSQAKDQPNFLYNFCINDNGNYTANSTYQNNLNILLSNLSTNTEIDYGFYNFSYGQNNDKVNAIGLCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAIGGYENCMLRYSNRSIFGIMEGSPTFYMWNTNSVTEVDQFNRVLGNLMKKLKEKAASSDDSRFKYATGNATDVNLIFQTIYGLVQCTPDLSLQDCNRCLDAAISEIPSCCNNKIGARVVKPSCIIRYESFLFYDPPPVVDPDEPSPPQEKSKSWHTTIAIVVLTVVLVVALLSFICICLMRNRRKEWLNLEEIEDDDNDYIEIAESLQFNFDTIRVATSNFSEANKLGHGGFGVVYRGKLSGGQVIAVKRLSRDSGQGDIEFKNEVLLLVKLQHRNLVRLLGFCLEGRERLLVYEFVHNKSLDYFIFDPIKKAELDWERRYKIIEGIVRGLLYLHEDSQLRIVHRDLKASNILLDENMNAKISDFGMARLLVDQTQVNTDKVVGT 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05529 506 ProSiteProfiles Gnk2-homologous domain profile. 34 137 IPR002902 -
Trre2g05529 506 Pfam Protein kinase domain 343 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05529 506 Gene3D Phosphorylase Kinase; domain 1 307 417 - -
Trre2g05529 506 Gene3D Transferase(Phosphotransferase) domain 1 418 506 - -
Trre2g05529 506 ProSiteProfiles Gnk2-homologous domain profile. 143 253 IPR002902 -
Trre2g05529 506 SMART serkin_6 342 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05529 506 FunFam Cysteine-rich receptor-like protein kinase 10 303 417 - -
Trre2g05529 506 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 506 - -
Trre2g05529 506 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 137 - -
Trre2g05529 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Trre2g05529 506 Gene3D - 31 136 IPR038408 -
Trre2g05529 506 Gene3D - 144 253 IPR038408 -
Trre2g05529 506 FunFam Cysteine-rich receptor-like protein kinase 10 145 253 - -
Trre2g05529 506 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 418 506 - -
Trre2g05529 506 Pfam Salt stress response/antifungal 155 249 IPR002902 -
Trre2g05529 506 Pfam Salt stress response/antifungal 39 134 IPR002902 -
Trre2g05529 506 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Trre2g05529 506 ProSiteProfiles Protein kinase domain profile. 342 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05529 506 SUPERFAMILY Protein kinase-like (PK-like) 324 506 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05529 Trre-Chr2 61590544 61592894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05529 6 506 Receptor kinase-like Gene Family AT4G05200 47.490 1.01e-152 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05529 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05529 - - gmx:100791056 627.476