Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05522 ATGTCAATTGTGTCTTGCAAGTTATTATTTTCCTTTTATTCTTTGCTCCTTCTTCTCATTATTAGTATTGTATCTCAAGCAAAAGCCCAGCCAAATTTTTTGGACAACTTTTGTATAAACGATAATGGCAACTACACAGCCAATAGTACATATCAAACCAACCTTAACATCCTTTTATCCAATCTCTCTACCAACACAGAAATCAGCTACGGTTTCTACAATTTCTCTTATGGCCAAAACACCGACAAAGTAAATGCCATTGGACTCTGCAGAGGAGATGTTAAACCAGATGTTTGCCGCAAGTGTCTCAATGATTCAAGAGTTCTTCTAACACAACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACAACTGCATGTTGCGCTATTCCAACCGATCAATATTTGGCGTTATGGAAGGCGAACCTTCGTTTCGTAGGTCAAATCCAAACAGTGTAACAGAGGTGGATCAATTTAAACAAGTTCTCGGGAACTTGATGAAGAAACTGAAAGAAAAAGCTGCATCAAGTGATGACTCTCGTTTTATGTATGCTGCTGATAATGCAACTGATGTGAATTTAAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTGTCATTGCAAGATTGCCATCGTTGTTTAGATGATGCTATCTCAGAAATCCCAAGTTGCTGTAATAACAAGATTGGTGGTAAAGTTGTTAAACCAAGTTGTAATATTAGATATGAATCCTCTCTCTTCTATGGTCCTACGCCTGTAATAGACTCAAATGAAACCCCTCCACCAAAAGAAACAAGCAAATCATCGCATACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTATTTATTGCTCTGCTAATTTTCATTTGCATATGCTTAAGGAGAAATCGCCACAGTAAGCCAGGAATAAATCTCAAAGAAATAGAAGAAGAAGAAGAAGAAAAAGATGATGATGATGATGATATTGAAATTGTTGAGTCATTACAATTCAATTTTGACACAATACGAGTTGCTACAAGTAACTTTTCCGAAGCTAATAAACTTGGACGTGGCGGATTTGGAGTTGTTTATAAGGGTAAACTCTCTGATGGGCAGGAGATAGCGGTAAAGAGATTGTCAAGAGATTATGGACAGGGAGATATTGAATTTAAGAATGAAGTGCTTTTACTAGTTAAACTTCAACATCAAAATTTGGTTAAACTACTAGGTTTTTGTCTAGAAGGAAGAGAAAGACTACTTGTCTATGAATTTCTTCCTAATAAAAGCCTTGATTACTTTATATTTGATCCAATAAAGAAAGCCCAACTAAATTGGGAAAGGCGCTACAAAATTATTGGAGGTATTGCTAGAGGTCTTCTTTACCTTCACGAGGATTCCCGACTTCGTATTATACATCGTGATCTTAAAACAAGTAACATTCTATTAGACGAAAATTTGAATGCTAAAATATCAGACTTTGGTATGGCCAGACTACTTCTTGTTGATCAAACTCAAGTAAATACAGATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAATATGCGATGTTTGGACAATTCTCAATAAAATCAGATGTTTTTAGTTTTGGCGTGTTAGTTCTGGAGATTATAAGTGGCCAAAAAATTAGCCACATTCTTCATGGGCAGAGTCTCGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATAAAAAATATAATAGATCCATCATTAAACAACGCTTCACAAAACGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGGTTAACAGACCAACTATGGCAACCATTGCACTCATGCTTAGTAGTTATTCCATCTCTCTCCCGGTACCTTTGGAGCCTGCATCTTTTTTGGGTGGCAAAACTAGAAGCCTTCCAGTTTCAGACATGCAGTTTGGGGAAGATAATTCAGGGGCGATAAGATCAAATGATCCACGTACATCAGAAAACAAGAATTTAACAGCTGAGTTATACCCCAAGTAA 2034 0.3663 MSIVSCKLLFSFYSLLLLLIISIVSQAKAQPNFLDNFCINDNGNYTANSTYQTNLNILLSNLSTNTEISYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRKCLNDSRVLLTQLCPNQKEAIGWYDNCMLRYSNRSIFGVMEGEPSFRRSNPNSVTEVDQFKQVLGNLMKKLKEKAASSDDSRFMYAADNATDVNLNFQTIYGLVQCTPDLSLQDCHRCLDDAISEIPSCCNNKIGGKVVKPSCNIRYESSLFYGPTPVIDSNETPPPKETSKSSHTTIAIVVPTVVVFIALLIFICICLRRNRHSKPGINLKEIEEEEEEKDDDDDDIEIVESLQFNFDTIRVATSNFSEANKLGRGGFGVVYKGKLSDGQEIAVKRLSRDYGQGDIEFKNEVLLLVKLQHQNLVKLLGFCLEGRERLLVYEFLPNKSLDYFIFDPIKKAQLNWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKTSNILLDENLNAKISDFGMARLLLVDQTQVNTDKVVGTYGYMAPEYAMFGQFSIKSDVFSFGVLVLEIISGQKISHILHGQSLEDLLSFAWRNWREGTIKNIIDPSLNNASQNEIMRCIHIGLLCVQENLVNRPTMATIALMLSSYSISLPVPLEPASFLGGKTRSLPVSDMQFGEDNSGAIRSNDPRTSENKNLTAELYPK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05522 677 Coils Coil 314 334 - -
Trre2g05522 677 FunFam cysteine-rich receptor-like protein kinase 10 424 625 - -
Trre2g05522 677 ProSiteProfiles Gnk2-homologous domain profile. 33 136 IPR002902 -
Trre2g05522 677 SMART serkin_6 348 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05522 677 Pfam Protein tyrosine and serine/threonine kinase 351 615 IPR001245 GO:0004672|GO:0006468
Trre2g05522 677 MobiDBLite consensus disorder prediction 650 677 - -
Trre2g05522 677 FunFam Cysteine-rich receptor-like protein kinase 10 145 252 - -
Trre2g05522 677 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre2g05522 677 ProSiteProfiles Protein kinase domain profile. 348 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05522 677 Gene3D Transferase(Phosphotransferase) domain 1 424 624 - -
Trre2g05522 677 Gene3D - 145 252 IPR038408 -
Trre2g05522 677 Gene3D - 31 135 IPR038408 -
Trre2g05522 677 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 667 - -
Trre2g05522 677 MobiDBLite consensus disorder prediction 650 671 - -
Trre2g05522 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Trre2g05522 677 FunFam Cysteine-rich receptor-like protein kinase 10 311 423 - -
Trre2g05522 677 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 136 - -
Trre2g05522 677 Pfam Salt stress response/antifungal 153 249 IPR002902 -
Trre2g05522 677 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Trre2g05522 677 CDD STKc_IRAK 354 618 - -
Trre2g05522 677 Gene3D Phosphorylase Kinase; domain 1 310 423 - -
Trre2g05522 677 ProSiteProfiles Gnk2-homologous domain profile. 142 252 IPR002902 -
Trre2g05522 677 SUPERFAMILY Protein kinase-like (PK-like) 331 618 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05522 Trre-Chr2 61569202 61572862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05522 7 635 Receptor kinase-like Gene Family AT4G21410 49.616 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05522 PK_Tyr_Ser-Thr 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05522 - - gmx:100791056 828.935