Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05519 ATGATTTCTTCCATTTCGCTTCTGCTATCCCTTCTAATCCCTCTATTTTTCACACTAAAATCCAAAGCCAACGCCCAACTAGTTTTCCGCTACCACGAATGTAACCAAAATTACGGAAACTTCACCGATACCAGTGCCTACAAGAACAACCGTAACACCGTATTACAACAAATATTATCCAACAAAACAATAGACTACGGTTTCTTCAATTTCTCTTACGGCAATAAACCTAACAAAATATACGCCATTGGACTCTGTCGAGGAGATATAGAACCAGTTGATTGCCTTGGTTGCCTAACAACTTCCGCAGCACTTCTCACAGACCGATGTCCAATACAAAAAGAAGCAATTGGTTACTACGACTCGTGCATCTTACGCTATTCAGACTATCAATTTTTTGGCACGGTGGAAACTAAAACCAGTAATTTTTACTCTATCGAACCCAAGACAGTGGTGGAAGATGCATTTAAGCAAAAACTTAATATCTTATTGGACGAACTTATTAGCACAGCCGCGAATGGTGACTCGCGTAAGAAGTTTGCCGAAAAGAGTGTTAAAGTAATTGATAAACCAAGTAGTAATGAGACTATATATGGTTTGGTTCAGTGTACACCAGATTTGACCAAGCAAGATTGTAGTACATGTTTGGATTCTGTTTCCCAAGGTCTTTCAAATTTCTGTGGAGATATGAAAGGTTGTTTATATCTTGGACCAAGTTGTTCTATTAGATATGATATCATTCCATTTTTTAAATCCATAAGAGGAGTTAAAAACAAAGATTCACCAGCACCACAGCCACAACCTTCGGAAACAAATGCTAATGCACTTCCTCCTACAACTGTGAAAGGAAACAGAAGGAAATTAAGAACTGTCATCGCTATCGTTGTAGCAGTTGTGGCCGGCATACTGCTTATTGCGGCCATCGCCATTGTTGTACGTACTTATTTTGAAAGGAGGAAACCAAGACCCCTATATACGCCTGAATTTGAAGGCCAAGAGAAAAATGAAGATGAATTTGAAGCAGAAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCGTCAGATTAGCTACAAACAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACTGTTTACAAGGGTATGCTCTCTGATGGACAAGATATTGCTATCAAAAGGTTGGCTAATAATTCTAAGCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTGACAGGAAAGCTTCAACATAGAAACTTAGTTAAGCTACTAGATCCAATCAAGCGTGCAAATTTGAGTTGGGAAAGACGCTACAAAATCATAAGAGATATTGCTCGTGGTCTTCTTTACCTTCATGAAGATTCTCGATTACAAATTGTTCATCGTGATCTCAAAATAAGTAACATTTTGTTAGATGAAGAGATGAACCCAAAAATAACAGATTTTGGCATTGCAAAATTGTTTGATGCCAATCAAACTGATGGCACAACGAAAACTGTTATTGGAACTTTTGGATATATGGCTCCCGAGTACATCAGACATGGACAATTTTCAGTCAAGTCAGATGTGTTCAGTTATGGTGTAATCATTTTAGAAATTGTTTGTGGCCGAAAAGTCATCGAGAATCGTGGCGGGGATAATATAGAGGATCTATTAAGCATTGCATGGAGAAATTGGAAGGCAGGGACAACTTCAGATATTGTAGATCCAATATTAGACCAAGGTTTTAATAAGAATGAAAAATTGAGAAGCATCCATGTTGGACTACTTTGTGTTCAAGAAGATATAAATGTGAGACCAACTATGAGTTCCGTTTTACAAATGCTTAGTAGTAGCACTTACCCACTTCCTGTGCCTTCTGAACCTCCATTCTTAATGCAACCCAAAAGGGCATTATCTATAGCATTAAGTGGCCAATATTCAGGTTCCACAAAGTCAAGTGATTCTGGATCAGGAAGTCAATTTACTCAAGGATCAACAAGTAAGTCCTTAGCTATAGATCAATAA 2016 0.379 MISSISLLLSLLIPLFFTLKSKANAQLVFRYHECNQNYGNFTDTSAYKNNRNTVLQQILSNKTIDYGFFNFSYGNKPNKIYAIGLCRGDIEPVDCLGCLTTSAALLTDRCPIQKEAIGYYDSCILRYSDYQFFGTVETKTSNFYSIEPKTVVEDAFKQKLNILLDELISTAANGDSRKKFAEKSVKVIDKPSSNETIYGLVQCTPDLTKQDCSTCLDSVSQGLSNFCGDMKGCLYLGPSCSIRYDIIPFFKSIRGVKNKDSPAPQPQPSETNANALPPTTVKGNRRKLRTVIAIVVAVVAGILLIAAIAIVVRTYFERRKPRPLYTPEFEGQEKNEDEFEAEAGNDLKVGDLLQFDFETVRLATNNFSDANKLGQGGFGTVYKGMLSDGQDIAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLDPIKRANLSWERRYKIIRDIARGLLYLHEDSRLQIVHRDLKISNILLDEEMNPKITDFGIAKLFDANQTDGTTKTVIGTFGYMAPEYIRHGQFSVKSDVFSYGVIILEIVCGRKVIENRGGDNIEDLLSIAWRNWKAGTTSDIVDPILDQGFNKNEKLRSIHVGLLCVQEDINVRPTMSSVLQMLSSSTYPLPVPSEPPFLMQPKRALSIALSGQYSGSTKSSDSGSGSQFTQGSTSKSLAIDQ 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05519 671 Gene3D Transferase(Phosphotransferase) domain 1 426 616 - -
Trre2g05519 671 ProSiteProfiles Protein kinase domain profile. 367 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05519 671 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Trre2g05519 671 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Trre2g05519 671 ProSiteProfiles Gnk2-homologous domain profile. 138 249 IPR002902 -
Trre2g05519 671 SMART serkin_6 367 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05519 671 MobiDBLite consensus disorder prediction 642 671 - -
Trre2g05519 671 Gene3D Phosphorylase Kinase; domain 1 330 425 - -
Trre2g05519 671 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Trre2g05519 671 SUPERFAMILY Protein kinase-like (PK-like) 353 643 IPR011009 -
Trre2g05519 671 Pfam Protein kinase domain 436 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05519 671 Pfam Protein kinase domain 368 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05519 671 MobiDBLite consensus disorder prediction 262 279 - -
Trre2g05519 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Trre2g05519 671 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Trre2g05519 671 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Trre2g05519 671 MobiDBLite consensus disorder prediction 257 281 - -
Trre2g05519 671 Gene3D - 140 249 IPR038408 -
Trre2g05519 671 Gene3D - 26 132 IPR038408 -
Trre2g05519 671 FunFam cysteine-rich receptor-like protein kinase 10 419 619 - -
Trre2g05519 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05519 Trre-Chr2 61552184 61556455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05519 39 659 Receptor kinase-like Gene Family AT4G21410 41.717 3.00e-158 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05519 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05519 - - tpra:123882259 892.878