Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05515 ATGTTTGGATTCAGCTTTGGGAGATATTTCATATATATTGGTGTAAAGAAAGAAAGGAAAGGTTGTTTATATCTTGGACCATGTTGTTCTGATATCACTCCTTTCTTTCGGTCCATAGTCATCAACAATACAGACTCACCAGCACCTGCACCACAGCCACAGCCACAGCCACAGCTTTTTGTGAAAGGGAAGAGGAGGAAATTAAGAATGATCATCGCTATCTTTGTAGTAGTTGTCGTGGCTGGCATAGTGGTTGTTGTTTTATGCATTTATTTCGAAAGGAGAAAATCAAGACTTGGATATACGCATGAATATGAAGGCCAAGAGAAAAATGAAGATGAATTTGAAGCTGAAGCGAGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTGGATACTGTCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACCGTTTATAAGGGTATGCTCTCTGATGGACAATATGTTGCTATCAAAAGGTTGGCAATCAATTCTAATCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTAACAGGGAAGCTTCAACATCGAAATTTAGTTAAACTAATAGGTTTCTGCTTACAAAGAAAAGAAAGGCTACTGATATATGAGTTTGTCCCTAATATAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGCAAATTTAAATTGGGAAAGACGCTACAAAATCATAAATGATATTGCTCGAGGTCTTATTTATCTTCATGAAGATTCTCGATTACAAATTGTTCACAGTGATCTCAAAATAAGTAACATTTTGCTAGATGAACAAATGAATCCAAAAATTATAGATTTTGGCATTGCAAGATTGTTTGATGCCAATCAAACCGATGGCATGACAAAGACTGTTGTTGGAACTTTTGGATATATGGCTCCAGAGTACATTAGAGACGGACAATTTTCAGTCAAGTCAGATGTGTACAGTTTTGGTGTAATGATTTTAGAAATTGTTTGTGGTCGGAGAATTATCGAGAAACATGGCGTGGAGAATAAAGAAAATTTATTAAGCATCGCATGGAAAAATTGGAAGGCAGGGACAACTTCAGATATTGTAGATCCAATATTAGACCAAGGATCAGGAAGCCAATTTACTGAAGGATCAACAAGTAAATCTTCGGTTACAGATTAA 1194 0.3593 MFGFSFGRYFIYIGVKKERKGCLYLGPCCSDITPFFRSIVINNTDSPAPAPQPQPQPQLFVKGKRRKLRMIIAIFVVVVVAGIVVVVLCIYFERRKSRLGYTHEYEGQEKNEDEFEAEASNDLKVGDLLQFDLDTVRLATSNFSDANKLGQGGFGTVYKGMLSDGQYVAIKRLAINSNQGETEFKNEVLLTGKLQHRNLVKLIGFCLQRKERLLIYEFVPNISLDYIIFDPIKRANLNWERRYKIINDIARGLIYLHEDSRLQIVHSDLKISNILLDEQMNPKIIDFGIARLFDANQTDGMTKTVVGTFGYMAPEYIRDGQFSVKSDVYSFGVMILEIVCGRRIIEKHGVENKENLLSIAWKNWKAGTTSDIVDPILDQGSGSQFTEGSTSKSSVTD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05515 397 SMART serkin_6 143 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05515 397 Gene3D Phosphorylase Kinase; domain 1 103 218 - -
Trre2g05515 397 SUPERFAMILY Protein kinase-like (PK-like) 128 376 IPR011009 -
Trre2g05515 397 FunFam Cysteine-rich receptor-like protein kinase 10 105 218 - -
Trre2g05515 397 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 53 378 - -
Trre2g05515 397 Gene3D Transferase(Phosphotransferase) domain 1 220 392 - -
Trre2g05515 397 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Trre2g05515 397 Pfam Protein kinase domain 144 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05515 397 FunFam Lectin-domain containing receptor kinase A4.3 219 389 - -
Trre2g05515 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Trre2g05515 397 ProSiteProfiles Protein kinase domain profile. 143 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05515 Trre-Chr2 61530054 61533912 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05515 47 381 Receptor kinase-like Gene Family AT4G21410 49.709 2.33e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05515 Pkinase 8.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05515 - - tpra:123882259 514.227