Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05512 ATGGCAATTGTGACTGTATCTTTCAAGTTATCATTTTCCTTTTTTTCTTTTCTCCTTCTTCTCATTATTACTATTGTATCTCAAGCTAAAGCCCAGCCAAATTTTTTGGACTACTTTTGTATAGACGATAATGGCAACTACACAGCCAATAGTAAATATCAACACAACCTCAACATCCTTTTGTCCAATCTCTCTACCAACACACAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCAAAACACCGACAAAGTAAACGCCATTGGACTCTGTAGAGGAGATGTTAAACCTGATGATTGCCGCAATTGTCTAAACGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGAGAATTGTATGTTGCGCTACTCAAACCGATCCATATTTGGCCTTATGGAACAATTTCCTTGGTTCTATAGAGCAAGCAAAGATATAGAAAAAGAGGTGGATCTATTTAATCGAGTTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCAGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACCGGTAATGAAACTGATGTGAAGTTGAATTTCGAAACCATATATGGACTTGTGCAGTGTACACCTGACTTATCATCACAAGATTGCATGGATTGTTTAAATGGTGCTATCGCAGAAATTCCAACTTGTTGTAGTAACAAGTTAAGTGCTAGAGTTATTGAACCAAGTTGTTATATTAGATATGATTCCTATCCGTTCTACGGTCCTCCGCTTGTAGTAGGTCCTCCTCCACTTGTAGTAGACCAAGATCAAACCTCTCAACCACAAGAAAAAAGCAAATCATCTCATACTGCCATTGCCATAGTTGTGGTTACTGTTGTTGTAGTTCTTGTTATGCTAACTTTGATCATTTGCACATGCTTAAGGAGAAATCGCCATGAAATACAAAATGATGATGATAATGATGATGATGATGATGATATTGACATCGCCGAGTCATTGCAATTCAACTTTGACACAATAGGAGTTGCTACAGATAACTTTTCCGAAACTAATAAACTCGGGCGTGGCGGATTTGGAGTTGTTTATCAGGGTAAACTCTCGAGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAAAATGAAGTGCTTTTATTGGCCAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAAGAAAAGAAAGGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTTATATTTGATCCAATAAAGAAAGCACAATTAGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGCCTTCTTTACCTTCACGAAGATTCTCGACTTCGTATTATACACCGTGATCTTAAAGCAAGTAACATTCTCTTGGACGAAAATATGGATGCTAAAATATCAGATTTTGGGATGGCCAGGCTATTGCTTGTTGATCAAACTCAAGTAAATACAGATAAAATCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGACAATTTACGGTAAAATCGGATGTTTTTAGTTTTGGCGTATTAGTTCTAGAAATTATAAGTGGCCAAAAAAGTAGTCGCATTCTTCAAGGGCAGAGTCAGGAGGATTTACTTAGCTTTACATGGAGAAACTGGAGGGAGGGTACAATCAGAAATATAATAGATCCATCATTAAACAATGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGGTTGACAGACCAACTATGGCAAACATTGCACTCATGCTTAGTAGTTATTCTTTCACCATGCCTCTACCTTTGGAGCCTGCATCTTCCTTTGTTGGAAGAACTGGTAGCCTTACATACATGCAATCATCCGGGGAAGATAAAGGAACTGGTAGCCTTACAACAGGTTCACATGAATCCAAGAAAAGTAAATCAGTATATGAGAGTACAATGTCTTAA 2034 0.3697 MAIVTVSFKLSFSFFSFLLLLIITIVSQAKAQPNFLDYFCIDDNGNYTANSKYQHNLNILLSNLSTNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDDCRNCLNDSRVLLTRLCPNQKEAIGWYENCMLRYSNRSIFGLMEQFPWFYRASKDIEKEVDLFNRVLGNLMKKLKEKAASSNDSRVKYATGNETDVKLNFETIYGLVQCTPDLSSQDCMDCLNGAIAEIPTCCSNKLSARVIEPSCYIRYDSYPFYGPPLVVGPPPLVVDQDQTSQPQEKSKSSHTAIAIVVVTVVVVLVMLTLIICTCLRRNRHEIQNDDDNDDDDDDIDIAESLQFNFDTIGVATDNFSETNKLGRGGFGVVYQGKLSSGQVIAVKRLSRDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLERKERLLVYEFVPNKSLDYFIFDPIKKAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDENMDAKISDFGMARLLLVDQTQVNTDKIVGTYGYMAPEYAMFGQFTVKSDVFSFGVLVLEIISGQKSSRILQGQSQEDLLSFTWRNWREGTIRNIIDPSLNNGSQNEIMRCIHIGLLCVQENLVDRPTMANIALMLSSYSFTMPLPLEPASSFVGRTGSLTYMQSSGEDKGTGSLTTGSHESKKSKSVYESTMS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05512 677 FunFam Cysteine-rich receptor-like protein kinase 10 310 424 - -
Trre2g05512 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre2g05512 677 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre2g05512 677 FunFam Cysteine-rich receptor-like protein kinase 10 147 254 - -
Trre2g05512 677 SMART serkin_6 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05512 677 Pfam Protein tyrosine and serine/threonine kinase 352 616 IPR001245 GO:0004672|GO:0006468
Trre2g05512 677 Gene3D Transferase(Phosphotransferase) domain 1 425 626 - -
Trre2g05512 677 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre2g05512 677 Pfam Salt stress response/antifungal 159 252 IPR002902 -
Trre2g05512 677 Pfam SKG6 family 271 336 IPR014805 -
Trre2g05512 677 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre2g05512 677 MobiDBLite consensus disorder prediction 647 677 - -
Trre2g05512 677 FunFam cysteine-rich receptor-like protein kinase 10 425 626 - -
Trre2g05512 677 SUPERFAMILY Protein kinase-like (PK-like) 333 619 IPR011009 -
Trre2g05512 677 Gene3D - 150 254 IPR038408 -
Trre2g05512 677 Gene3D - 33 137 IPR038408 -
Trre2g05512 677 CDD STKc_IRAK 355 619 - -
Trre2g05512 677 Gene3D Phosphorylase Kinase; domain 1 313 424 - -
Trre2g05512 677 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre2g05512 677 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 668 - -
Trre2g05512 677 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05512 677 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05512 Trre-Chr2 61504545 61507632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05512 9 633 Receptor kinase-like Gene Family AT4G21410 50.466 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05512 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05512 - - gmx:100791056 800.045