Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05510 ATGCTTTCTTCACTTTGGCTTCTGCTTTCATTTCATCCTCTCTTTTTCACACAAATATCTGAAGCCAATGACCAGCTAATTCCCCGCAGCTACAAATGTAACGAAATTCTCGGAAACTTCACCATTGGTAGTGACTACGGGAACAACCGCGACACAGTTTTAGCACAAATATATTCAAACAAAGAAATAGACTATGGATTCTACAATTTCTCGTACGGTGTAGAAACTGACCAAACAGTGAAGACAGTGGTGGATGATGCATTTAATCGAACACTTAAGAACTTGTTGGATGAACTTAAAAGTACGGCCGCGGAAGGTGACTTGCATAAGAAGTATGCTGAAAATAATGCTACAATAATTGATGAATCAAGTAGTAGTCATAGTAAAAACACAATACATGGTCTTGTTCAGTGTACACCAGATTTGTCTAAGCAAGATTGTACTCATTGCTTGGATTTGGCTTCAAGGGATCTTTCAAAGTGGTGTAAAGACATGAAAGCATGTTTGTATATAGGACCAAGTTGTTCCATTAGATATAAAATCTCTCAAATTTTTATAACCATAGTCCATGACAGTATTTCAGAGCCACCAACATCACAGCCTAATTATTTTTTGACAGCATCACCACCACAGCCTCTATTTTTTCTTCTGTCATCATCACCACCAGAGCCGGAGCCACTTCCTCTTGCACCTCTTCCTGCATCACCATTGGAACCACCTCCTCCTCCACCACCACCACCTCCTCCTCCTAAAACTCCATCACTATCGGAACCACCTTCTACTGCAACTTCTCCTGAAGCATCAATAGTGGAACCACCTCCTTCTGCACCTTCTCCTGAAACTGCATCACCACCGGAATCAATTCCTTCCACACCTCCTCCTGAAACTGAATCACGATCTGATTCAGAATCACTTTATTTAGCATCTCCTCCAAAAACTGGCCAAGAGAAATATGAAGAAGAAGTCTTTTTTGAAGCAACAAATGAAGAAGAATTTGAAATTGAAATTGAAACAGAAGTTGCTAATGATCTTAAAGTTGGTGATATATTGCAATTTGACTTTGAAATCATCAGATTAGCTACAAACAACTTCTCTGATGCAAATATTCTTGGTGAAGGTGGATTCGGAATTGTTTATAAGGGTATGCTCCCTAATGGACAAGATATTGCTATCAAAAGGTTGGCCAATAATTCTAAGCAAGGAGAAATAGAATTTGAGAATGAAGTGTTGCTGACAGGGAAGCTTCAACATAGAAACTTGGTTAAACTACTAGGTTTCTGTTTACAAAGAAAAGAAAGACTACTAATATATGAGTTTGTCCCTAACAAAAGTCTTGATTACATCATATTTGATCCAATCAAGCGTGCAAATTTGAATTGGGAAAGACGCTACAAAATCATAAAAATTATTTGTGGCCGGAGAATCATGGAGAATCATTACAGGGAGAATCCAGAGGATTTATTAAGCATTGCGTGGAAAAATTGGAGGGCAGGGACAAGTTTAGATATTGTAGACCCAATATTAAGTGAAGGCATTGAGAAGAATGAAAAAATGAGAAGCATCCATGTTGGATTACTATGTGTTCAAGAAGATATAGAAATTAGACCAGCTATGAGTTCAGTTTTAACAATGCTAAATAGCACTTCTTTCCCACTTCCTGAACCTTTGGAACCTCCTTTTTTAATGCATCCAAGAATGGCATTATCTTTAGTGTCAACGTCTGATTCAGGATCAGGAGGAAGTCAATTTACTCAAGGATCAACAACCAAGTCCTCACAGATTAATGCTCTGCTGAATATATTTTTTTGGGTGATGAAAATTCAATCATAA 1830 0.3798 MLSSLWLLLSFHPLFFTQISEANDQLIPRSYKCNEILGNFTIGSDYGNNRDTVLAQIYSNKEIDYGFYNFSYGVETDQTVKTVVDDAFNRTLKNLLDELKSTAAEGDLHKKYAENNATIIDESSSSHSKNTIHGLVQCTPDLSKQDCTHCLDLASRDLSKWCKDMKACLYIGPSCSIRYKISQIFITIVHDSISEPPTSQPNYFLTASPPQPLFFLLSSSPPEPEPLPLAPLPASPLEPPPPPPPPPPPPKTPSLSEPPSTATSPEASIVEPPPSAPSPETASPPESIPSTPPPETESRSDSESLYLASPPKTGQEKYEEEVFFEATNEEEFEIEIETEVANDLKVGDILQFDFEIIRLATNNFSDANILGEGGFGIVYKGMLPNGQDIAIKRLANNSKQGEIEFENEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVPNKSLDYIIFDPIKRANLNWERRYKIIKIICGRRIMENHYRENPEDLLSIAWKNWRAGTSLDIVDPILSEGIEKNEKMRSIHVGLLCVQEDIEIRPAMSSVLTMLNSTSFPLPEPLEPPFLMHPRMALSLVSTSDSGSGGSQFTQGSTTKSSQINALLNIFFWVMKIQS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05510 609 Gene3D - 78 183 IPR038408 -
Trre2g05510 609 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Trre2g05510 609 ProSiteProfiles Protein kinase domain profile. 364 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05510 609 MobiDBLite consensus disorder prediction 293 309 - -
Trre2g05510 609 MobiDBLite consensus disorder prediction 215 319 - -
Trre2g05510 609 ProSiteProfiles Gnk2-homologous domain profile. 70 184 IPR002902 -
Trre2g05510 609 Gene3D Phosphorylase Kinase; domain 1 325 439 - -
Trre2g05510 609 MobiDBLite consensus disorder prediction 215 256 - -
Trre2g05510 609 Gene3D Transferase(Phosphotransferase) domain 1 464 551 - -
Trre2g05510 609 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 466 582 - -
Trre2g05510 609 SUPERFAMILY Protein kinase-like (PK-like) 349 468 IPR011009 -
Trre2g05510 609 Pfam Salt stress response/antifungal 85 180 IPR002902 -
Trre2g05510 609 MobiDBLite consensus disorder prediction 270 292 - -
Trre2g05510 609 Pfam Protein tyrosine and serine/threonine kinase 368 466 IPR001245 GO:0004672|GO:0006468
Trre2g05510 609 SUPERFAMILY Protein kinase-like (PK-like) 469 570 IPR011009 -
Trre2g05510 609 FunFam Cysteine-rich receptor-like protein kinase 10 326 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05510 Trre-Chr2 61495192 61503435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05510 376 563 Receptor kinase-like Gene Family AT4G38830 29.167 9.61e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05510 PK_Tyr_Ser-Thr 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05510 - - gsj:114393588 233.417