Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05507 ATGGCAATTGTGATTGTATCTTGCAAGTTATCATTTTCCTTTTATTATTTTCTCCTTCTTCTCATTATTAGCATTGTATCTCAAGCTAAAGCCCAGCCAAATTTTTTGGACAACTCTTGTGTAAACGATAATGGCAACTACACAGCCAATAGCACATATCAAAACAACCTTAACATCCTTTTGTCCAATCTCACTTCCAACACAAAAATCAACTATGGTTTCTACAATTTCTCTTATGGCCAAAACAACGATAAAGTAAACGCCATTGGATTCTGCAGAGGAGATGTTAAACCTGATGTTTGCCGCAATTGTCTTAATGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACAACTGCATGTTGCGCTACTCTAACCGATCAATATTTGGCATTATGGAACAATTTCCTTGGTCTTATATAGCAAGCAGAGATATAGAAACAGAGGTGAATCAATATAATCGAGCTCTTGGGAACTTGATGAAGAAATTGAAAGAAAAAGCAGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACGGGTAATGAAACTGATGTGAACTTGAATTTTGAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTATCATCACAAGATTGCATGGATTGTTTAAATGGTGCTATCTCAGAAATTCCATTTTGTTGTAGTAAAATGTATAGTGTTAGAGTTGTTGAACCAAGTTGTAATATTAGATATGAATCCTATCCCTTCTACGGTCCTTCGCTTGTAGTAGGTCCTCCTCCGCTTGTAGTAGACCCAGATGAAACCTCTCGACCACAAGAAAAAAGCAAATCATCTCATACTGCCATTGCCATAGTTGTGCCTACTATTGTTGCAGTTGCTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCATAGTATGGCAGAGTCAAATCTCGAAGGTGAAGAGGAAATGATGATTGCCGAGTCATTGCAATTTAATTTTGATATCATAAGAGTTGCTACAAGTGATTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAATTGTTTATTGGGGCCAACTACCTAATGGACAAATGATTGCTGTCAAAAGATTGTCAACAAATTCTGGCCAAGGAGACTTGGAATTCAAAAATGAAGTACTTTTAGTAGCCAAACTTCAACATCGAAATTTAGTTAGGCTACTTGGTTTTAGTTTGGAAAGGAGAGAAAGATTGCTTATTTATGAATTTGTTCCAAATAAAAGTCTTGATTACTTTATATTCGATCTAACAAGGAAAACACAATTGAATTGGGAAAAGCGCTCCAATATCATAAAAGGTATTGCCCGTGGTATTCTTTATCTTCATGAGGATTCTCACTTGCGAATTATACACCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGACGAGATGAATCCTAAGATATCTGATTTTGGATTGGCAAGACTGTTTGATATCGGTCAAACTCATGGAAGTACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGTTATGCTTGGAGAATTTTCGGTAAAATCGGATGTTTTTAGTTTTGGAGTATTAGTTCTTGAAACTATAAGTGGTCATAAAAATAGTGCAAACATTTGTCATGGGGAGGATGTGGAGTATCTATTGACTTATGCATGGAGAAGCTGGAGAGAAGGGAAAGCTATAAATATAATAGATCCATCATTAAGCAGCAACATTTCAAAAGATGAAATAATGAGATGCATCCATATTGGTTTACTGTGTGTTCAAGAAAATGTAGTTGACAGACCAACCATGGCTTCTGTTGCACTTATGCTTAATAGTAATTCTCTCACTCTCTCAATACCTTCAAAACCTGCATATTTTATGGGAAGTGCAAGTAGAACACTACCAGACATGCAGCAACAAGTTGATAATTTAAGTGCAACAAGATCGAATGAATCGGTGAACCAAATTTCAATTACTGATCTATACCCACGATAG 2022 0.3615 MAIVIVSCKLSFSFYYFLLLLIISIVSQAKAQPNFLDNSCVNDNGNYTANSTYQNNLNILLSNLTSNTKINYGFYNFSYGQNNDKVNAIGFCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAIGWYDNCMLRYSNRSIFGIMEQFPWSYIASRDIETEVNQYNRALGNLMKKLKEKAASSNDSRVKYATGNETDVNLNFETIYGLVQCTPDLSSQDCMDCLNGAISEIPFCCSKMYSVRVVEPSCNIRYESYPFYGPSLVVGPPPLVVDPDETSRPQEKSKSSHTAIAIVVPTIVAVAVLLTLIICICLRRNRHSMAESNLEGEEEMMIAESLQFNFDIIRVATSDFSDSNKLGQGGFGIVYWGQLPNGQMIAVKRLSTNSGQGDLEFKNEVLLVAKLQHRNLVRLLGFSLERRERLLIYEFVPNKSLDYFIFDLTRKTQLNWEKRSNIIKGIARGILYLHEDSHLRIIHRDLKASNILLDDEMNPKISDFGLARLFDIGQTHGSTNRIVGTYGYMAPEYVMLGEFSVKSDVFSFGVLVLETISGHKNSANICHGEDVEYLLTYAWRSWREGKAINIIDPSLSSNISKDEIMRCIHIGLLCVQENVVDRPTMASVALMLNSNSLTLSIPSKPAYFMGSASRTLPDMQQQVDNLSATRSNESVNQISITDLYPR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05507 673 SMART serkin_6 347 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05507 673 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre2g05507 673 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 672 - -
Trre2g05507 673 CDD STKc_IRAK 353 620 - -
Trre2g05507 673 Gene3D - 33 137 IPR038408 -
Trre2g05507 673 Gene3D - 148 254 IPR038408 -
Trre2g05507 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Trre2g05507 673 FunFam cysteine-rich receptor-like protein kinase 10 423 626 - -
Trre2g05507 673 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre2g05507 673 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre2g05507 673 Gene3D Transferase(Phosphotransferase) domain 1 423 627 - -
Trre2g05507 673 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Trre2g05507 673 Gene3D Phosphorylase Kinase; domain 1 309 422 - -
Trre2g05507 673 FunFam Cysteine-rich receptor-like protein kinase 10 147 254 - -
Trre2g05507 673 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05507 673 FunFam Cysteine-rich receptor-like protein kinase 10 310 422 - -
Trre2g05507 673 Pfam Protein kinase domain 348 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05507 673 SUPERFAMILY Protein kinase-like (PK-like) 333 646 IPR011009 -
Trre2g05507 673 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre2g05507 673 Pfam Salt stress response/antifungal 157 252 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05507 Trre-Chr2 61479427 61482441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05507 9 673 Receptor kinase-like Gene Family AT4G21410 48.629 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05507 Pkinase 8.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05507 - - mtr:11442310 777.704