Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05505 ATGCATATCTTCAAATCCTCAACAACAACTACAACAATAGCAACACAATTGATTCTTCTTTCATCCTTGTTAACTTTACTTACCTTCTCAATTGAAGCATCTCCAGTATACACTTCCCATGTCTGCACAACACTGCCAGGATCCACCTATTACAAACCAAATTCTAATTTCCAAACCGCTTTAAAAACCCTTCTCTCTTCCCTCATCTCAAACTCCACCTTCCACAACGGTTTCTACAACATCCACATCCCGCTCTTCAATTCCCCTAACGACTTAAAAGGTCTCTTTCTCTGCCGTGCCGACGTCACTCCCACCATCTGTCAAAACTGTGTAACCGCCGCAGCTAATAACATCACTAAATTCTGCAACAACGAAACAGAGTCTATAATCTGGTACGATGAGTGCTTATTGCGTTACTCTAACACTTCTTTCTTGAATCATATAGTTCCAGCAACAGCCTTGGAATCTGTTGAGAGTGTTCCTGATTCTCAAGTTTCGCAATTCAGTGATTTCATTGCAAAGCTTTTGAAGGATTTAGCAAATGAAGCTGTCAATTCTAATTCAGGTCAGAAGAAATTTTCTGCAAAAGAAGATAATTTCTTGGATTCTATCAAGATATATTCTTTGGCACAGTGTACACCTGATTTGTCCACTTTTGATTGCAACACTTGCTTGCAAAGTGCTATTAGTTCTATTGGAGATTGTTGTAGTACGAAACGAGGCGCAAGATCACTTCTTCCGAGTTGTAATATTCGATATGAATCTTATCCGTTTTACAATGTTTCTGCTGTTTCCACTCAGCCACAACTTCAATTTCCTTCTTCAGGGAAAAGCAATGTTTCTATAATTGTTGCGATTGTTGTTCCAATTGTTGTTGTTGTGGTGCTTTTCATTATCGGCTGTTACTTCCTACGTAAGAGGGCAATCAAGAAGTATAAGTATAATGCTACATTCATCCAGGGTTCATCTTCAATTAGGAGGGAGGATTTTACTGATATAGAGTGTTTGCAATTTGACTTCACCTCAATTGAAGCTGCCACAAATTGCTTCTCCGAAGAGAACAAGATTGGCCAAGGTGGATTTGGCGTGGTTTATAAGGGTATCCTTCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCAATGACCTCCTTGCAGGGCAGGGAGAAGATACTTGTCTATGAATACATAGCAAATAAAAGCCTTGATCACTTTCTATTTGATCCTGTAAAGCAAAGGGAGTTAGATTGGTCAATACGGTACAAGATTATAGTTGGCATCGCTCGAGGGATTCTTTATCTCCACGAAGACTCCCAACTTAGAATTATTCATCGTGATCTCAAAGCTAGCAATGTTCTATTAGATGAGAACATGAACCCAAAGATTTCAGATTTTGGGATGGCTAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTCGGGACTTACGGCTACATGTCTCCAGAATATGCAATGCGTGGACAGTTCTCAGTGAAATCAGATGTGTTTAGCTTCGGTGTCTTAGTTTTGGAAATTGTGAGTGGCAAGAAGAATACCGATTTAAATCATTGGAATAATGCTGATGACCTCTTAAGCTATGCTTGGAAAAAATGGTCAGAGCAAACACCTTTGGAGTTACTGGATCCAACACTACGAGGTTCTTATTCAAGAAACGAAGTTATCAGATGCATCCATATTGGTTTGTTATGTGTTCAGGAAAATCCACTTGACAGGCCATCCATGGAAACTATTGCACTTATGCTTAACAGTTATTCAGTTACCATGTCATTACCTCAGCAGCCACCTTCTTTCCTGCGTGGAAGAACACCTGATAGAATAAAGCAAGGGCTAGATTCTGATCAGTCCACCACCTGTTCAATTCCATGGTCTGTGAATGAAGTATCTATTACCGAAGTACACCCACGATAA 1941 0.3988 MHIFKSSTTTTTIATQLILLSSLLTLLTFSIEASPVYTSHVCTTLPGSTYYKPNSNFQTALKTLLSSLISNSTFHNGFYNIHIPLFNSPNDLKGLFLCRADVTPTICQNCVTAAANNITKFCNNETESIIWYDECLLRYSNTSFLNHIVPATALESVESVPDSQVSQFSDFIAKLLKDLANEAVNSNSGQKKFSAKEDNFLDSIKIYSLAQCTPDLSTFDCNTCLQSAISSIGDCCSTKRGARSLLPSCNIRYESYPFYNVSAVSTQPQLQFPSSGKSNVSIIVAIVVPIVVVVVLFIIGCYFLRKRAIKKYKYNATFIQGSSSIRREDFTDIECLQFDFTSIEAATNCFSEENKIGQGGFGVVYKGILPNGQEIAVKRLSMTSLQGREKILVYEYIANKSLDHFLFDPVKQRELDWSIRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLNHWNNADDLLSYAWKKWSEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQENPLDRPSMETIALMLNSYSVTMSLPQQPPSFLRGRTPDRIKQGLDSDQSTTCSIPWSVNEVSITEVHPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05505 646 Gene3D Transferase(Phosphotransferase) domain 1 398 603 - -
Trre2g05505 646 ProSiteProfiles Gnk2-homologous domain profile. 39 144 IPR002902 -
Trre2g05505 646 ProSiteProfiles Protein kinase domain profile. 350 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05505 646 FunFam cysteine-rich receptor-like protein kinase 10 397 599 - -
Trre2g05505 646 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 644 - -
Trre2g05505 646 Pfam Protein tyrosine and serine/threonine kinase 386 589 IPR001245 GO:0004672|GO:0006468
Trre2g05505 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Trre2g05505 646 SMART serkin_6 350 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05505 646 Gene3D - 154 258 IPR038408 -
Trre2g05505 646 Gene3D - 37 144 IPR038408 -
Trre2g05505 646 SUPERFAMILY Protein kinase-like (PK-like) 335 614 IPR011009 -
Trre2g05505 646 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Trre2g05505 646 ProSiteProfiles Gnk2-homologous domain profile. 148 258 IPR002902 -
Trre2g05505 646 Pfam Salt stress response/antifungal 48 141 IPR002902 -
Trre2g05505 646 Pfam Salt stress response/antifungal 163 256 IPR002902 -
Trre2g05505 646 FunFam Cysteine-rich receptor-like protein kinase 10 152 258 - -
Trre2g05505 646 Gene3D Phosphorylase Kinase; domain 1 313 397 - -
Trre2g05505 646 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05505 Trre-Chr2 61463995 61469721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05505 19 646 Receptor kinase-like Gene Family AT4G05200 46.677 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05505 PK_Tyr_Ser-Thr 2.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05505 - - cam:101512516 970.304