Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05500 ATGAATTCTTATTCCACCATGTCTTCGAATTCCTTAAACCTGTTTTTTCTGTTCATCCTCACAACCTTTCTCCTCCTTAGCTCAACTTCAAAAGCTCAGAACCAGAACCCTACTTTTCTCTACCAATTTTGTTCAACCAACAAAACCACTGCCAACAGCACCTACAAATCAAACCTTAGAACTCTCTTCTCTTCACTATCTTCCAACGCCGCCAAAGAATTCTACAACACTACAGTCCCAAGCAGAACCCCCTCAAACACGGTATATGGCCTATACATGTGCAGAGGCGATGTTTCTTCTTCCCCTTGCCAACAATGTGTGACCAACGCAACACAGAAACTATCAACAGACTCAGACTGTTCCTTATCCAAACGAGCTGTAATATGGTACGATGAGTGCATGGTTCGATACTCCAACACCTCTTTTTTCTCTATGATGGCTACAAATCCCGGTGTTATATTGATGAACACCGGAAATATTACTAATCAAGAAAGCTTCATGCCTTTGATGTTTAATACAATGAACAAAACAGCAGATAAAGCGGCAAATTCTTCTGTTGGTGCAAAAAACAAGATTGCAGAACGTGTCTTAGCGATGCTATACATGGCCAAAATTTTGGCCATGATTCCACAAGGAAAGCAAGGAGGGAGACTTCTATTTCCTAGCTGTAATGTTAGATATGAAGTGTACCCTTTTTATCACAACCTTGCTCCCTCACCATCACCATCACCACCACCTTCAGCAACACCAAGACTTGTTCCTCCAACAACCGCTCGTAATTTAGGAGGAAGTAGTGGGATTTCATCAGGGACAATTGTTGCAATTGTGGTTCCAATTTCCGTGGCCGCGCTGTTATTAATTGTGGGAGTTTGTTTCATAAGTAGAAGAGTATGGAAGAAGCGCGACTCTGCACAAGAACCGAAAACTGAAACTGATATTAGCACCGTGGAATCCTTGAGATTTGATTTGAGTACGCTTGAGGAAGCCACAAACAAATTCTCAGATACTAATAAGCTAGGTGAAGGTGGATTTGGCGAGGTTTACAAGGGCTTGCTTTCAAGCGGACAAGAAATAGCTGTCAAGAGACTCTCTAAAAACTCGGGACAAGGCGGAGAACAATTTAAGAATGAAGTTGAGTTGGTTGCCCAGCTTCAACATAGAAATTTAGCTAGGCTTCTGGGATTTTGCTTGGAAGGAGAAGAAAAGATACTTGTTTATGAATATGTGGCCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGTTGTTGGATTGGACAAGGCGTTACAAGATTATTGGAGGGGTTGCACGAGGCATTACATATCTTCACGAAGATTCTAGGCTTAAAATTATTCATCGTGATCTCAAAGCTAGCAACATATTGTTGGATGGAAATATGAATCCAAAAATCTCTGACTTTGGCATGGCAAAATTATTCGGAGTGGATCAAACTCAAGGAAATACCAGTAGAATAGTAGGCACATATGGTTACATGTCTCCGGAGTATGCAATGCACTGA 1530 0.4111 MNSYSTMSSNSLNLFFLFILTTFLLLSSTSKAQNQNPTFLYQFCSTNKTTANSTYKSNLRTLFSSLSSNAAKEFYNTTVPSRTPSNTVYGLYMCRGDVSSSPCQQCVTNATQKLSTDSDCSLSKRAVIWYDECMVRYSNTSFFSMMATNPGVILMNTGNITNQESFMPLMFNTMNKTADKAANSSVGAKNKIAERVLAMLYMAKILAMIPQGKQGGRLLFPSCNVRYEVYPFYHNLAPSPSPSPPPSATPRLVPPTTARNLGGSSGISSGTIVAIVVPISVAALLLIVGVCFISRRVWKKRDSAQEPKTETDISTVESLRFDLSTLEEATNKFSDTNKLGEGGFGEVYKGLLSSGQEIAVKRLSKNSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEGEEKILVYEYVANKSLDYILFDPEKQRLLDWTRRYKIIGGVARGITYLHEDSRLKIIHRDLKASNILLDGNMNPKISDFGMAKLFGVDQTQGNTSRIVGTYGYMSPEYAMH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05500 509 MobiDBLite consensus disorder prediction 238 252 - -
Trre2g05500 509 FunFam Cysteine-rich receptor-like protein kinase 10 296 408 - -
Trre2g05500 509 Pfam Salt stress response/antifungal 44 139 IPR002902 -
Trre2g05500 509 MobiDBLite consensus disorder prediction 238 260 - -
Trre2g05500 509 SMART serkin_6 333 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05500 509 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Trre2g05500 509 SUPERFAMILY Protein kinase-like (PK-like) 314 508 IPR011009 -
Trre2g05500 509 Pfam Protein kinase domain 334 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05500 509 Gene3D - 35 142 IPR038408 -
Trre2g05500 509 ProSiteProfiles Protein kinase domain profile. 333 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05500 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Trre2g05500 509 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 409 500 - -
Trre2g05500 509 Gene3D Phosphorylase Kinase; domain 1 294 408 - -
Trre2g05500 509 Gene3D Transferase(Phosphotransferase) domain 1 409 509 - -
Trre2g05500 509 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 37 141 - -
Trre2g05500 509 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Trre2g05500 509 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05500 Trre-Chr2 61433920 61436853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05500 5 509 Receptor kinase-like Gene Family AT4G05200 50.373 8.81e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05500 Pkinase 3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05500 - - mtr:25485264 724.546