LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g05499	ATGATTATCAAAGTATTATCTAAGATATTTATGCTTATTACTCTTATCTTAATTATTACCATAACAGAAACTTCTGCATCTGTGTTCAACAATGTTACATGTACAAACAACAAAACATTCATACAAAACAGTACTTTTCATTCAAATCTCAAAACTCTTCTCTCTTCACTTTCTTCTAATGTAACAAATGATGTTAGATTCTTCAACACAACATCAGGAAAAGGTTTAGACAAAGTCTATGGTCTCTATATGTGTCGTGGAGATGTTCCATTTGCTTTATGTAGAGAGTGTATTGGTTTTGCAACACTAACAATTCCAAAATCATGTCCTTCTTCAAAAGAAGCTGTGATTTGGTACAACGAGTGTTTGTTAAGATATTCATATAGATTCATCTTTTCAAAAATGGAAACTTTACCAAGATACAAGATTGTGATTCCAATGGGGGATCCTGTTTTGTTACATAGTAAAGGGTTTTATGCAGCTTTAAGATCTGTTTTGAATGTGCTTCCAAATGAAGCTGCGGTTTCTATTGGTGGTTTTAACAAATATGCTGTTAAACAAGAAAATGCTTCTGTTAGTGTGACGCTTTATGGTCTTGCTCAGTGTACGCCGGACTTGTCAGCCGGGGATTGTAGGCGGTGTATTGAGGATGCGGCCGCGGAGTTTCCTAAGGCTTGTTGTGAAGGTAGCATAGGGGAAACAATTTTGTTTCCAAGCTGTTTTGTTAGATATGAGACTTATCCGTTTTATCAGCATTCTGGAACCTCGGCATCAATATCAACTTCCGATAAGGGAGGAAGAAATATTTCAACACATTTGATTGCCATCATAGTTGTCTTGGTTGTGATTTTGGTGGTGATTTTTTGCATTGGCTGCTATATCTTATGGATAAAAGCGAAGAAGAGACGCAAGGCTAGTCACAGAGAAAACCTTGGGCTTGAATTTAGTAACACTGAGTCCTTGGAATTTGATTTTGCTACAATTGAAATAGCAACAAACAATTTTTCTGATGATAGCAAAATAGGCAAAGGGGGATATGGACAAGTCTACAAGGGAACTCTTCCTAATGGACAAGAAATAGCTGTGAAGAGACTGTCGAAAACTTCTGGCCAAGGAGCAGAAGAATTCAAAAATGAAGTGATGTTAATAGCCAAACTTCAACATAGAAATTTGGTGAGATTAATAGGATTTTGCCTTGAAGACCAAGAAAAGATACTAATCTATGAATATGTGCCTAACAAAAGTCTTGATCACTTCCTATTTGATTCTCGGAAGCAAAAAGAATTAACTTGGCCTGAACGGTTTAATATCATAAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCAAGATTATACATCGCGATATTAAACCGAGCAATGTACTTCTAGATAACAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGCTATAGAGCAAGTTCAAGGACACACAAATAGAGTTGTCGGAACATATGGTTATATGTCTCCAGAATATGCAATGCACGGACAATTTTCAGTGAAGTCAGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTATTAGCGGAAAAAAGAATTCATGTAGTTTTGAATCATGTCGTGTCGATGATCTCTTGAGTTATGCTTGGAATCAATGGAATGGTGAAACTCCATTTGAAATGCTGGATCCAATTATGCAAGAATCTTATGCTCCAAATGAAGTAGAAAAATGTGTGCAAATTGGTTTATTGTGTGTCCAAGAAAATCCAGATGATAGGCCTACAATGGGAACTGTTGTTTCATATCTTACTAATGTCTCAGCTGATATGCCATTTCCAATGGAACCAGCATTTTTCATGCATGGAAGAACAAGAAGAAATTCAGGCTATTCAGCTGAACATGAATCATATTCAGACTTTACACTAAAAAAATATTGGAAAGAAATGATTGGATGGAGACAATCAGTCTAA	1980	0.3601	MIIKVLSKIFMLITLILIITITETSASVFNNVTCTNNKTFIQNSTFHSNLKTLLSSLSSNVTNDVRFFNTTSGKGLDKVYGLYMCRGDVPFALCRECIGFATLTIPKSCPSSKEAVIWYNECLLRYSYRFIFSKMETLPRYKIVIPMGDPVLLHSKGFYAALRSVLNVLPNEAAVSIGGFNKYAVKQENASVSVTLYGLAQCTPDLSAGDCRRCIEDAAAEFPKACCEGSIGETILFPSCFVRYETYPFYQHSGTSASISTSDKGGRNISTHLIAIIVVLVVILVVIFCIGCYILWIKAKKRRKASHRENLGLEFSNTESLEFDFATIEIATNNFSDDSKIGKGGYGQVYKGTLPNGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEDQEKILIYEYVPNKSLDHFLFDSRKQKELTWPERFNIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMNPKISDFGMARMVAIEQVQGHTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKKNSCSFESCRVDDLLSYAWNQWNGETPFEMLDPIMQESYAPNEVEKCVQIGLLCVQENPDDRPTMGTVVSYLTNVSADMPFPMEPAFFMHGRTRRNSGYSAEHESYSDFTLKKYWKEMIGWRQSV	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g05499	659	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	27	131	-	-
	Trre2g05499	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Trre2g05499	659	Gene3D	-	27	130	IPR038408	-
	Trre2g05499	659	Gene3D	-	152	249	IPR038408	-
	Trre2g05499	659	Gene3D	Transferase(Phosphotransferase) domain 1	411	614	-	-
	Trre2g05499	659	Pfam	Salt stress response/antifungal	156	247	IPR002902	-
	Trre2g05499	659	Pfam	Salt stress response/antifungal	34	127	IPR002902	-
	Trre2g05499	659	Pfam	Protein tyrosine and serine/threonine kinase	339	606	IPR001245	GO:0004672\|GO:0006468
	Trre2g05499	659	FunFam	cysteine-rich receptor-like protein kinase 10	411	613	-	-
	Trre2g05499	659	SUPERFAMILY	Protein kinase-like (PK-like)	320	633	IPR011009	-
	Trre2g05499	659	ProSiteProfiles	Gnk2-homologous domain profile.	139	249	IPR002902	-
	Trre2g05499	659	Gene3D	Phosphorylase Kinase; domain 1	296	410	-	-
	Trre2g05499	659	ProSiteProfiles	Protein kinase domain profile.	335	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g05499	659	ProSitePatterns	Protein kinases ATP-binding region signature.	341	363	IPR017441	GO:0005524
	Trre2g05499	659	ProSiteProfiles	Gnk2-homologous domain profile.	28	131	IPR002902	-
	Trre2g05499	659	FunFam	Cysteine-rich receptor-like protein kinase 10	297	410	-	-
	Trre2g05499	659	SMART	serkin_6	335	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g05499	659	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	21	636	-	-
	Trre2g05499	659	CDD	STKc_IRAK	341	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g05499	Trre-Chr2	61427917	61432486	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g05499	7	641	Receptor kinase-like Gene Family	AT4G05200	43.485	0.0	559

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre2g05499		PK_Tyr_Ser-Thr	9.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g05499	-		-	mtr:25485264	1089.72