Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05494 ATGGCCTCTTTCCATCATGTCTTTCTCTTTATCCTTGTTTGCCTCGTCAATTTCGTAACCACTAAAGCAAAAAATGATAATATTCACTCGATGTCTTGCTTAAATATCAACGAAACAACTCCAAATAACGCCTTACAATTGAACCTCAAGACCCTCCTCGCAGATTTATCTTCAAACGCCACTGCTAACACAGAATTCTACAGCACTACAATACCAGGCAAAAACCACTCCTCTGATACAGTCTATGGGATGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTGACTCGTTACGATGTACCCTCACACCGATTGAACTATGCTTGTTCCTGGTCCAATGGGATGATGATTCAGTCCAAGGAGTGCATGGTCCGATATTCCAACAATTCTTTCTTCTCCCCTACTCACTTTAGCTCACGCTATAGTGCATGCTCCGCTGTTGATGTTTCCAACCAGGCAGCATTCGAGTGTTTAGTTTTCAAAACCTTGAATGGTGTGGCAGATGCGGCAGCCAATTTTCCAATTGGCGTCAAGAAGTATGCCACAAAGGAAGCAACCGTATCTGAATTTCAAACCCTTTATTTCCAAGCTCAGTGCACACCAGACCTGTTACCATATGATGTGTACCCTTTCTATCGCCCCAGTAATGCTCCCACACCACAAGATCTCATTCCAGCTTCCGATACAATTGATTCAAAATACTCACAGCATCCTGCTTATCTTTCCCACAATTGTTCAAACAATGAAACCATGAACAACAATTTTCAATCGAATCTCAGAACACTCTTCTCTTCATTGTCTTCCAATGCCATCAGAACCGGTTTCTTCAAGGCAACTGTCAACACGGTCAATGGCCTCTTCATGTGCCGCGGTGATATCTCCCTCTCCCCTACCCTCTGTCAGTTATGTGTCCAAGATGCAATCAAAAGAATATCCTCAGAGTGTCCTACCTCCAAAGAGGCTATACTTTGGTATGATAAATGCTTACTCCGCTATTCCTATCATTCTCTCCTTTCAGGTATTGATACAAGTGCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCTAACGTGAACCTGCTTCAAAGCTTCGCCACTTGGATACTAGCAAATACTTTATATGAGTTGAAGTATATCCAGACCGGCAAGATTACTATTAAAAACTATGCAACAAGATTGGTAAAATTGAATAATCATCAAACCCTTTACACTCTTGTTCATTGCACGCCAGATTTGTCTGATGGAGATTGCGACACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTAGTTTGGCAAGTCCAGAAGGAAAAATTCTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGCAATGGCGATGAACCGGAGGCAATTGGGCAATTTAGTCCTCCTCCAACAACTAAAGATGATGAAAAAAGAAAGTCGCAAATGATGATAGTTTCTGTTCCGATCATCCTTTCAACATTGCTGCTAACTTTTTCCTACTATCTGCTAACGAAAAGAGCAAGGAAGAGCAGCTATAAGGCCTTAATTCTAAAAGAAAATTTTGGTCATGAAAGTACAACTTTGGAGGGTTTGCAATTCGAAATGGCCGTAATTAGAACAGCAACAGACAACTTTTCACACGAAAACAAAATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGGCGTTCTTTCTGATGGACGACAAATTGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATTAACGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAACAAAGAAATCTGGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTTATTTATGAATATGTGCCAAATGGGAGCCTTGATTACTTATTATTTGACACTCGACAACAAAATTTAAGCTGGGATGAACGTTACAAAATTATAGGTGGAACGGCTGCAGGAGTTCTATATTTGCATGAATATTCTCGTCTCAAAGTTATACATCGTGATCTGAAGCCTAGTAATGTTCTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGTATGGCGAGAATTGTTCAAATAGATCAAGATCGTGGACAAACAACCAAAATTGCTGGAACATGGGGTTACATGTCCCTAGAGTATGCAATGCTTGGACAATTTTCAGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTGGAAAGAGAAATATAAATCCTTATCAATCACTTCATGTTACTGAAGGCCTCACAAGTTATGTATGGAAACAATGGAAAAATGAAACTCCATTAATCATATTGGATCCAAAAATTGAAAATTATTCTCATATGGAAGTTAGTAAGTGCATACAGATAGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGGCCTACAATGGCAACGGCTGTTTCATATCTTAGGAGTTCTTCACCAGAATTGCCATCTCCACAAGAACCAGCATTTTTCATACATGACAGAATGAATAAAGAAGTAACAGCACACATGGAATCAAGTTCTACCAATAATTTTATATCATTTTCTGTCAACGATATGTCTATAAGTGAATTTTATCCTCAGCGATAG 2643 0.389 MASFHHVFLFILVCLVNFVTTKAKNDNIHSMSCLNINETTPNNALQLNLKTLLADLSSNATANTEFYSTTIPGKNHSSDTVYGMFMCKGDVPAHLCSQCVTNLTRYDVPSHRLNYACSWSNGMMIQSKECMVRYSNNSFFSPTHFSSRYSACSAVDVSNQAAFECLVFKTLNGVADAAANFPIGVKKYATKEATVSEFQTLYFQAQCTPDLLPYDVYPFYRPSNAPTPQDLIPASDTIDSKYSQHPAYLSHNCSNNETMNNNFQSNLRTLFSSLSSNAIRTGFFKATVNTVNGLFMCRGDISLSPTLCQLCVQDAIKRISSECPTSKEAILWYDKCLLRYSYHSLLSGIDTSAPKFHQFNMANASNVNLLQSFATWILANTLYELKYIQTGKITIKNYATRLVKLNNHQTLYTLVHCTPDLSDGDCDTCLKNIFQNEIPWSSLASPEGKILYPSCYMMFGLSQFYSNGDEPEAIGQFSPPPTTKDDEKRKSQMMIVSVPIILSTLLLTFSYYLLTKRARKSSYKALILKENFGHESTTLEGLQFEMAVIRTATDNFSHENKIGEGGFGEVYKGVLSDGRQIAVKRLSSSSKQGINEFKNEILLIAKLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDYLLFDTRQQNLSWDERYKIIGGTAAGVLYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGQTTKIAGTWGYMSLEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYQSLHVTEGLTSYVWKQWKNETPLIILDPKIENYSHMEVSKCIQIGLLCVQENPNVRPTMATAVSYLRSSSPELPSPQEPAFFIHDRMNKEVTAHMESSSTNNFISFSVNDMSISEFYPQR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05494 880 Pfam Protein tyrosine and serine/threonine kinase 559 824 IPR001245 GO:0004672|GO:0006468
Trre2g05494 880 Gene3D - 246 344 IPR038408 -
Trre2g05494 880 Gene3D - 356 464 IPR038408 -
Trre2g05494 880 Gene3D - 145 216 IPR038408 -
Trre2g05494 880 Gene3D - 26 139 IPR038408 -
Trre2g05494 880 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 517 631 - -
Trre2g05494 880 ProSitePatterns Protein kinases ATP-binding region signature. 562 584 IPR017441 GO:0005524
Trre2g05494 880 Gene3D Phosphorylase Kinase; domain 1 517 631 - -
Trre2g05494 880 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 252 875 - -
Trre2g05494 880 ProSiteProfiles Gnk2-homologous domain profile. 245 345 IPR002902 -
Trre2g05494 880 SUPERFAMILY Protein kinase-like (PK-like) 538 826 IPR011009 -
Trre2g05494 880 ProSiteProfiles Protein kinase domain profile. 556 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05494 880 ProSiteProfiles Gnk2-homologous domain profile. 27 139 IPR002902 -
Trre2g05494 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Trre2g05494 880 SMART serkin_6 556 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05494 880 FunFam cysteine-rich receptor-like protein kinase 10 632 833 - -
Trre2g05494 880 Gene3D Transferase(Phosphotransferase) domain 1 632 836 - -
Trre2g05494 880 ProSiteProfiles Gnk2-homologous domain profile. 352 464 IPR002902 -
Trre2g05494 880 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Trre2g05494 880 Pfam Salt stress response/antifungal 397 459 IPR002902 -
Trre2g05494 880 Pfam Salt stress response/antifungal 253 341 IPR002902 -
Trre2g05494 880 CDD STKc_IRAK 562 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05494 Trre-Chr2 61401933 61406339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05494 244 879 Receptor kinase-like Gene Family AT3G45860 43.223 1.19e-158 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05494 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05494 - - gmx:100785282 993.416