Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05493 ATGGCCTCTTTCCGCCCCGTCTTTCTCTTTATCCTTGTTTGCTTCATCAATTTTGTAACCACTAAAGCAAAGGATAATGATATTATCTCGATGACTTGCTCGAATATCAACAAAACCACTCCAAATAACGCTTTCCAATTGAATCTCAAGTCCCTCCTCACAGATTTATCTTCAAACGCCACTGCTAACAAGGAATTCTACAACACTATAGTAGAAGGCAAAAACCATTCGACTGATACACTCTATGGTCAGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTGACTCGTTATAATTTATCCTCAGACCCACTGAACTATGATTATTGTTCCCTGTCCAAAGAGGTGATAATTCAGTATGACGAGTGCATGGTCCGATATTCCAACAAATCTTTCTTCTCCCCTACTCACTTTAGTTCACTTTCTAGCGAGTGCTCATCTGTTAATGTGTCCAACCAGGCAGTATTCAAAACCTTGAATGGTGTGGCAGATGAGGCAGCCAATTTTTCAATTGGCGTCAAGAAGTATGCCACAAAGGAAGCAACCATATCTGAATTTCAAAACCTATATTTTCAAGCTCAGTGCACACCAGACCTGTCACCACAAGATTGCAGGAAATGTCTGAATGTTACCATAACGGACGTTCAGAACTGTAAAATTAGCAACGAAGTGGTAGGGGAGTCTGAAACTTACAATTGTTACATCAGATATGATGTGTACCCTTTCTATCGCCCCAGTAATTCTCCCACACCACAAGATCTCGTTCCAGCATCCAATACAATTGATTCAAAATACTCACAGCATCCTGCTTATCTTTCCCACCATTGTTCAAACAATGAAACCATGAATAACAGTTTTCTATCAAATCTCAGAACACTCTTTTCTTCATTGTCTTCCAATGCCATCAGAACCAGTTTCTTCAAGACAACTGTCAACACGGTCAATGGCTTCTTCATGTGCCGCGGTGATATCTACCTCTCCCCTACCCTCTGTCAATTATGTGTCCAAGATGCAATCAAAAGAATATCCTCGGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTATGACAAATGCTTACTCCTCTATTCCTATCATTCTTTCCTTTCAGGTATTGATACAAGTTCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCAAACCTGAACCTGCTTCAAAGCTTCGCTACTTGGATACTAGCAAATACTTTATATGGATTGCAGTATATCCAGACAGAGACAGGGGAGAGTACTATTAAAAACTATGAAACAAGATCGGTAAAATTGAATAATCATCAAACACTTTACACTCTTGTTCAATGTACACCAGATTTGTCTGATGGAGATTGCAGCACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTAGTTTGGCAAGTCCAGAAGGAAAAATTTTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGGAATGGTGATGAACCAGAAGAAAATGAAAAAAGAAGGTCGCGAATGGTGATAGTTGTTGTCCCGATCATCCTGTCAACATTGCTTCTAACTTTTTCCTGCTATTTGCTAAGGAGAAAAGCAAGAAAGAGCAGTTATAAGACCTTAATTCTTAAAGAAAACTTTGGCCATGAAAGTACCACTTTGGAGGGTTTGCAATTCGAAATGGCCGTAATTAGAACAGCAACAGACAACTTTTCACATGAAAACAAGATTTGCGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGACATGTAGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATCGTCGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAGCAAAGAAATCTTGTGGTATTAATAGGTTTCTGCATAGAAGAGCAAGAGAAGATTCTTATTTATGAATATGTGCCAAATGGGAGCCTTGATTACTTTTTATTTGATACTCAACAACAGAAGTTAACCTGGGACGAACGTTACAAAATTATAGGAGGGACGGCGTTAGGAATTCTTTATTTACATGAATATTCTCGTCTCAAAGTTATACATCGTGATCTTAAACCTAGTAATGTTTTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGCATGGCTAGAATTGTTCAAATAGATCAAGATCAAGGACATACAAACAAAATTGCTGGAACATGGGGTTACATGTCCCCAGAGTATGCAATGCTTGGACAATTTTCGGAGAAATCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACAGGAAAAAGAAATATAAATCCTTATGAATCACATCATGTTACCGAAGGCCTCACAAGTTATGTATGGAGACAATGGAAAAATGGAACTCCATTAATCATATTGGATCCAAAATTTGAAAATTATTCTCGTATTGAAGTTACTAAGTGTATACAGATTGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGACCTACAATGGCAACGGTTGTTTCATATCTCAATAGTCATTCACCAGAATTGCCATCTCCACAAGAACCAGCATTTTTCATACAAAATAGAATGAATGAAGAAGTAACAGCACAAATGGAATCAAGTTCTGCCAATAATTTTATATCATTATCAGTCAACCATATGTCTATAAGTGAATTTTATCCTCAAAGATAG 2706 0.3755 MASFRPVFLFILVCFINFVTTKAKDNDIISMTCSNINKTTPNNAFQLNLKSLLTDLSSNATANKEFYNTIVEGKNHSTDTLYGQFMCKGDVPAHLCSQCVTNLTRYNLSSDPLNYDYCSLSKEVIIQYDECMVRYSNKSFFSPTHFSSLSSECSSVNVSNQAVFKTLNGVADEAANFSIGVKKYATKEATISEFQNLYFQAQCTPDLSPQDCRKCLNVTITDVQNCKISNEVVGESETYNCYIRYDVYPFYRPSNSPTPQDLVPASNTIDSKYSQHPAYLSHHCSNNETMNNSFLSNLRTLFSSLSSNAIRTSFFKTTVNTVNGFFMCRGDIYLSPTLCQLCVQDAIKRISSECPTSKEAIIWYDKCLLLYSYHSFLSGIDTSSPKFHQFNMANASNLNLLQSFATWILANTLYGLQYIQTETGESTIKNYETRSVKLNNHQTLYTLVQCTPDLSDGDCSTCLKNIFQNEIPWSSLASPEGKILYPSCYMMFGLSQFYRNGDEPEENEKRRSRMVIVVVPIILSTLLLTFSCYLLRRKARKSSYKTLILKENFGHESTTLEGLQFEMAVIRTATDNFSHENKICEGGFGEVYKGILSDGRHVAVKRLSSSSKQGIVEFKNEILLIAKLQQRNLVVLIGFCIEEQEKILIYEYVPNGSLDYFLFDTQQQKLTWDERYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDQGHTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESHHVTEGLTSYVWRQWKNGTPLIILDPKFENYSRIEVTKCIQIGLLCVQENPNVRPTMATVVSYLNSHSPELPSPQEPAFFIQNRMNEEVTAQMESSSANNFISLSVNHMSISEFYPQR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05493 901 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 896 - -
Trre2g05493 901 Gene3D Transferase(Phosphotransferase) domain 1 653 859 - -
Trre2g05493 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Trre2g05493 901 ProSiteProfiles Gnk2-homologous domain profile. 141 250 IPR002902 -
Trre2g05493 901 SUPERFAMILY Protein kinase-like (PK-like) 562 878 IPR011009 -
Trre2g05493 901 Pfam Protein tyrosine and serine/threonine kinase 580 846 IPR001245 GO:0004672|GO:0006468
Trre2g05493 901 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 536 652 - -
Trre2g05493 901 Gene3D Phosphorylase Kinase; domain 1 538 652 - -
Trre2g05493 901 ProSiteProfiles Protein kinase domain profile. 577 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05493 901 ProSiteProfiles Gnk2-homologous domain profile. 276 376 IPR002902 -
Trre2g05493 901 Pfam Salt stress response/antifungal 429 492 IPR002902 -
Trre2g05493 901 Pfam Salt stress response/antifungal 33 137 IPR002902 -
Trre2g05493 901 Pfam Salt stress response/antifungal 176 247 IPR002902 -
Trre2g05493 901 Pfam Salt stress response/antifungal 284 372 IPR002902 -
Trre2g05493 901 SMART serkin_6 577 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05493 901 ProSiteProfiles Gnk2-homologous domain profile. 389 497 IPR002902 -
Trre2g05493 901 FunFam cysteine-rich receptor-like protein kinase 10 653 854 - -
Trre2g05493 901 Gene3D - 25 140 IPR038408 -
Trre2g05493 901 Gene3D - 146 250 IPR038408 -
Trre2g05493 901 Gene3D - 277 376 IPR038408 -
Trre2g05493 901 Gene3D - 389 497 IPR038408 -
Trre2g05493 901 CDD STKc_IRAK 583 848 - -
Trre2g05493 901 ProSiteProfiles Gnk2-homologous domain profile. 27 140 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05493 Trre-Chr2 61396691 61401051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05493 274 900 Receptor kinase-like Gene Family AT4G05200 42.216 5.46e-160 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05493 PK_Tyr_Ser-Thr 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05493 - - gmx:100785282 1055.05