LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g05492	ATGGGTTCCTTCCATTTTCCGTTTTTAATTCCCATATTCATTTCCCTCTTTGTTCATTGCTCTCCATCTCCCATCATACAAGCTGCTATTGATAAAGGCACCCATGCTTACTATAACTGCACCAGGAACAGCACTTCTGCAACCTATAACGCTTACCGTTCCAACATCAAAACACTCCTAGATTTTCTCTCCTCCAATAGTAATAACAATGCTAGATACTACAACGCCACAGTTGTAAGCGGTAACACTGTGGACACCGTCTACGGTCTCTTCCTTTGTAGACACCTTGACCCCAAAATCTGCCAATCGTGCGTGATTGAAGCAGCCAAACTTTTATTATCCCTGTGCACCACAGCAAAAGAAGCCATAGTTTGGTACAAAGTATGCTATGTGCGATATTCTGATGATAACTTCTTTTCCACTGTGGAGAAAACTCCAGAACTTTGTTTCATCAATGATAAGGACTATGTCGGTCAGGTTGGGCGCTTCAACAACATCCTATGGGATATGTTGAACGATTTGAGAATTGAAGCAGCAAATGTTTCTGCTAAGTTTGCTGGCAAGTCAGCAAACCTCATAGAAAACCAAAAACTATATGGCTCTGTTTGGTGCCTCCCATACCTATCTGCAGAGAACTGCAGCTGGTGTCTTAGTGATGCCATAGCAGAAGTTCCAACCAGTTGCTGCAGAGGAAAATCTGGAGGCTCAATATTTTATCCCAGTTGCGGTCTTAGATTTGAATTATATCCATTCTACAAGACTAGCGACAATATTTCTTGGGTGCCATCGCCACCCACAAGTCCTCGCCCTTTAGCTCCACCAGGAAAAGGAAAACAGAAGACACTAACAATATTTGAGATCGTTGTTCCCATTGTTGTCTCACTGGTGCTTTTAGTCTTGGGATGCTGTTTCTTTCTATATAGAAAAGAAACAAAGAATCAGCATGATATTCTCAAAGAAAGCTTTGGGAATGAAAGTACCACTTTGGAGTCCTTGCAATTTGAATTTGCCAAAATTGAAGCAGCAACAAACAGATTTGCTGCAGAAAACAGGATAGGCAGAGGTGGATTTGGAGAAGTCTACAAGGGAATTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGGCTTACAAGAAGCTCCGGACAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCAAGCTTCAACACAGAAATCTAGTGAGATTACTAGGATTCTGTTTGGAAGATGAAGAAAAGATACTTATCTATGAGTATGTGCCAAACAAGAGTCTTGATTACTTTTTATTTGATCCCCAGAAGCGAAAACTATTATCTTGGTCTCAACGTCAGAATATCATCAAAGGAATTGCTCGTGGAATTCTTTATCTCCATGAAGATTCTCGTCTCAAAATAATACACCGTGATCTGAAACCTAGCAATGTGTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGCATGGCTAGGATTGTATCAATAGATCAAATTGAAGAAAGTACATGCACGATTGTAGGGACATATGGTTATATATCTCCGGAATATGCAATGCACGGATACTTTTCTGTAAAATCAGATGTGTATAGTTTCGGAATCGTGGTTCTAGAGACTATTAGTGGAAAGAGGAAAGGTTGTTCTGCTGAATTAGAGCGTGTTGATGATATCCGGAGATATGCATGGACGAAATGGGCAGAGCAAACACCACTTGAACTAATGGATCCTAATATAGAAGGAAGTTATTCGCAAGAAGAAGTCATCAAGTACATCCACATTGGTTTGTTATGTGTTCAGGAAAATCCAGATGACAGACCTACAATGGCAACAATTGCATTCTACCTCAACAGCCCTTCAATCAACTTGCCATCCCCTCTTGAACCACCGTATTTTAAGCGTAGTGGAATTGAAGAAAACATGGTCTTCAACAATGCATTGGATAGTAATAGTACCAGTGACTCAATCAACGGACTCTCTATTACTAAGTTCTTTCCTCGTTAA	2007	0.4001	MGSFHFPFLIPIFISLFVHCSPSPIIQAAIDKGTHAYYNCTRNSTSATYNAYRSNIKTLLDFLSSNSNNNARYYNATVVSGNTVDTVYGLFLCRHLDPKICQSCVIEAAKLLLSLCTTAKEAIVWYKVCYVRYSDDNFFSTVEKTPELCFINDKDYVGQVGRFNNILWDMLNDLRIEAANVSAKFAGKSANLIENQKLYGSVWCLPYLSAENCSWCLSDAIAEVPTSCCRGKSGGSIFYPSCGLRFELYPFYKTSDNISWVPSPPTSPRPLAPPGKGKQKTLTIFEIVVPIVVSLVLLVLGCCFFLYRKETKNQHDILKESFGNESTTLESLQFEFAKIEAATNRFAAENRIGRGGFGEVYKGILSDGQEIAVKRLTRSSGQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLFDPQKRKLLSWSQRQNIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVSIDQIEESTCTIVGTYGYISPEYAMHGYFSVKSDVYSFGIVVLETISGKRKGCSAELERVDDIRRYAWTKWAEQTPLELMDPNIEGSYSQEEVIKYIHIGLLCVQENPDDRPTMATIAFYLNSPSINLPSPLEPPYFKRSGIEENMVFNNALDSNSTSDSINGLSITKFFPR	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g05492	668	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	307	421	-	-
	Trre2g05492	668	ProSiteProfiles	Gnk2-homologous domain profile.	34	138	IPR002902	-
	Trre2g05492	668	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	44	664	-	-
	Trre2g05492	668	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Trre2g05492	668	SUPERFAMILY	Protein kinase-like (PK-like)	330	635	IPR011009	-
	Trre2g05492	668	ProSiteProfiles	Gnk2-homologous domain profile.	144	251	IPR002902	-
	Trre2g05492	668	Pfam	Salt stress response/antifungal	40	135	IPR002902	-
	Trre2g05492	668	Pfam	Salt stress response/antifungal	156	249	IPR002902	-
	Trre2g05492	668	Gene3D	Transferase(Phosphotransferase) domain 1	422	623	-	-
	Trre2g05492	668	ProSiteProfiles	Protein kinase domain profile.	346	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g05492	668	Gene3D	Phosphorylase Kinase; domain 1	307	421	-	-
	Trre2g05492	668	Pfam	Protein kinase domain	348	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g05492	668	Gene3D	-	148	251	IPR038408	-
	Trre2g05492	668	Gene3D	-	33	138	IPR038408	-
	Trre2g05492	668	CDD	STKc_IRAK	352	618	-	-
	Trre2g05492	668	ProSitePatterns	Protein kinases ATP-binding region signature.	352	374	IPR017441	GO:0005524
	Trre2g05492	668	SMART	serkin_6	346	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g05492	668	FunFam	cysteine-rich receptor-like protein kinase 10	422	624	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g05492	Trre-Chr2	61386868	61390305	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g05492	25	668	Receptor kinase-like Gene Family	AT4G05200	44.985	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre2g05492		Pkinase	1.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g05492	-		-	gmx:100793219	978.778