Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05486 ATGCATTACTCCCTGCTGCTCCCAGTTCTCATCATGATCCTCACATTATTCTTCAACCATCACCACACCACAGTTTCTGCACAATATTATAAGTGTTCAACCAACAATAACAACTCACTAAACAGCATATACCGTATCAACCTTAAAACTCTTTTGTCATGGCTTTCATCCAATTCCACACCTGCTACTCAAATATACACCACCACCGTTACAGAACCTAACACCAGCAACACTATCTTTGGCCTCTTCACATGCGAAATCGGAGACAACTATCCTAGCTGTAAACAGTGCGTTACAAATGCAACCAAACGGATAGTAGAACTTTGTCCAATGTCAAAAGAAGCCACAATATATGCTGCTTATTGCATGGTTCGTTATTCCGATCGTTATTTCTTTGCTACAGTGGATGAGAGTCCTAAACTAAGCTTCATGAACGAACACAACTATGTGGGGCCACAGTTTGGTCGGTTCAACACAATACTTTTGAATACTATGAATGATATCAGAAATTCAATATCAAATGTTCCTAATGGATCCTTGAAGTATTCTTATAAATCAGTTAAAATCACAGATAACCAAACGCTGTACGCATTGGGAAATTGCATTCCATACCTTTCCTCAGATGACTGTAGTTGGTGTCTTGGTGATGCCATAGCAGAGATTCGAACATCTTGTTGTAAAGGAAAAACTGGAGGCAGAATTTACTTCCCTAGTTGCTCAATAAGATTCGAACTTTATCCATTTTACGATAGACTAGCTTCGACGACAATCCAGCCACCGCCACTATCAACTTCAACGGTTCCTCCTAGCACCTTGGAATCACCAGGAGAAAAAAGGAAAAAGTCAATTATATCAGTGCTAGTTGTGGTTTTCCCGGTTGTTGTGACAGTGGTGCTTTTATGTTTGGGTTGCAGCTGTTTTATAAGAAGGAAACAGAGAAAGAATCAAGACAAAGAAAGCTTTGGGGATGATGTTGCTATTTTGGAATCCTTGAGGTTTGGTTTAGGTGAAATTGAATCAGCAACAAACAAGTTTGCTAAAGAAAATATGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGCGAAGAGGTCGCTGTGAAGAGGCTTTTGGGAAGCTCTAAGCAAGGTGCAAGAGAATTTAAGAATGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTTTGTATTGATGAACAGGAAAAGATACTCATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGATCCCCTAAAGAGAAGACAATTAGATTGGCATGAAAGGCACAAGATTATTGGAGGAATTGCTAGAGGAATTCTTTATCTTCACGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATATTTTGCTGGACAGTAACATGGATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTGGTGACCGATAATATTGAAGAAAATACACACAGAATTGTTGGGACATATGGTTACATGTCTCCAGAATATGCAATGCATGGCCAATTTTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTACTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCCTCTGAATCAGATTGTGTTGATATACGGAAATATGCTTGGACAAAATGGAAAAACCAAACAACACTGGAACTATTGGATCCTCAGATGGAAGGATCTTTGTGTCAAAATGATATAATAAGATGCATCCATATCGCATTATTATGTGTACAGGAAGACCCTAATGATAGACCCACAATGGCAAAAGTTGTTTCCTTCCTCAACAATCCTTCAGTGGATTTGCCATTACTTACGGAACAGTCATTTTTCATGAAAAGAACAATGGAGGACAATATGGTCAGAAAGGGATTGGACTCTATGGATAACTCAAACTGTGAATTGACAGTAGGTATATTTCCTGATGTCTTAAAGCACAAAGTGAGGCGACATTTTGATGAAGGAGATCAGGTTTCAGCTTTAGTAACAGGAGAATTTTATACAAAGAATGAGCATTTTCCAGGATCTCCAACTCAAGATGCTATCAGGAAGGATCTTAATCTGTCTTTGGCAGAGGGTGTTCCACTTGACAATCTAGAGATACTAAGAGTAATTTATGGCATCTTTCCCACCTATCGCGAGAGCCCGCTACCAGCTGCTTTTAGTAGAGTTTTGCAGTTTGGTGATGCCAGCGGTATACAATCGCCTGTATCATTTGGTGGTTTCGGGAGTTTGACCAGACATCTTGGGTGA 2313 0.3882 MHYSLLLPVLIMILTLFFNHHHTTVSAQYYKCSTNNNNSLNSIYRINLKTLLSWLSSNSTPATQIYTTTVTEPNTSNTIFGLFTCEIGDNYPSCKQCVTNATKRIVELCPMSKEATIYAAYCMVRYSDRYFFATVDESPKLSFMNEHNYVGPQFGRFNTILLNTMNDIRNSISNVPNGSLKYSYKSVKITDNQTLYALGNCIPYLSSDDCSWCLGDAIAEIRTSCCKGKTGGRIYFPSCSIRFELYPFYDRLASTTIQPPPLSTSTVPPSTLESPGEKRKKSIISVLVVVFPVVVTVVLLCLGCSCFIRRKQRKNQDKESFGDDVAILESLRFGLGEIESATNKFAKENMIGKGGFGEVYKGVLSNGEEVAVKRLLGSSKQGAREFKNEVLVIARLQHKNLVKLQGFCIDEQEKILIYEYVPNKSLDYFLFDPLKRRQLDWHERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNILLDSNMDPKISDFGMARIVVTDNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRKYAWTKWKNQTTLELLDPQMEGSLCQNDIIRCIHIALLCVQEDPNDRPTMAKVVSFLNNPSVDLPLLTEQSFFMKRTMEDNMVRKGLDSMDNSNCELTVGIFPDVLKHKVRRHFDEGDQVSALVTGEFYTKNEHFPGSPTQDAIRKDLNLSLAEGVPLDNLEILRVIYGIFPTYRESPLPAAFSRVLQFGDASGIQSPVSFGGFGSLTRHLG 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05486 770 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Trre2g05486 770 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
Trre2g05486 770 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Trre2g05486 770 Gene3D Phosphorylase Kinase; domain 1 305 420 - -
Trre2g05486 770 CDD STKc_IRAK 351 617 - -
Trre2g05486 770 FunFam cysteine-rich receptor-like protein kinase 10 421 622 - -
Trre2g05486 770 Pfam Protein kinase domain 346 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05486 770 Gene3D - 24 131 IPR038408 -
Trre2g05486 770 Gene3D - 140 248 IPR038408 -
Trre2g05486 770 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 309 420 - -
Trre2g05486 770 ProSiteProfiles Gnk2-homologous domain profile. 137 248 IPR002902 -
Trre2g05486 770 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 645 - -
Trre2g05486 770 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05486 770 SMART serkin_6 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05486 770 Pfam Salt stress response/antifungal 32 128 IPR002902 -
Trre2g05486 770 Pfam Salt stress response/antifungal 153 246 IPR002902 -
Trre2g05486 770 PIRSF SRK 7 114 IPR024171 GO:0004674
Trre2g05486 770 PIRSF SRK 212 660 IPR024171 GO:0004674
Trre2g05486 770 SUPERFAMILY Protein kinase-like (PK-like) 331 634 IPR011009 -
Trre2g05486 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05486 Trre-Chr2 61361022 61366830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05486 29 651 Receptor kinase-like Gene Family AT4G05200 48.019 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05486 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05486 - - tpra:123882552 1100.5